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Abi 3730 l dna sequencer

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI 3730 × l DNA Sequencer is a capillary electrophoresis-based instrument designed for high-throughput DNA sequencing. It features a multi-capillary array and a laser-based detection system to automate the DNA sequencing process.

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2 protocols using abi 3730 l dna sequencer

1

Overexpression of BrGRF8 in Arabidopsis

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To create transgenic plants overexpressing BrGRF8, the full-length cDNA was amplified by PCR with the primers BrGRF8-forward (5′-CGGGATCCATGATGAACCTAAGTGGAACTAGTG-3′) and BrGRF8-reverse (5′-TAGTCGACTCAGCTACCAGTGTCGAGTCTTGAC-3′). The underlined sequences represent restriction sites for BamHI and SalI, respectively. The amplified DNA fragments were cloned into the pGEM-T easy vector (Promega, Madison, WI, USA) and sequenced using an ABI 3730 × l DNA Sequencer (Applied Biosystems, Foster City, CA, USA). Then, the BrGRF8 cDNA in the pGEM-T easy vector was double-digested with BamHI and SalI and subcloned downstream of the CaMV 35S promoter into the binary vector pCAMBIA2300-35S-OCS to construct the plasmid CaMV35S:BrGRF5 (35S:BrGRF8). The pCAMBIA2300-35S-OCS vector without the BrGRF8 cDNA insert was used as a negative vector control. The 35S:BrGRF8 and vector control constructs were transformed separately into Agrobacterium tumefaciens LBA4404 and then the A. tumefaciens-mediated transformation of Arabidopsis was performed via vacuum infiltration
[30 ]. The transgenic plants were screened on 1/2 MS agar plates containing 50 mg/ml kanamycin sulfate, and further verified by reverse transcription PCR. Homozygous T3 generation transgenic plants were used for subsequent analyses.
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2

Sanger Sequencing of PCR Amplicons

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PCR primers flanking each candidate mutation were designed using Primer3 software, and PCR amplicons were Sanger-sequenced on an ABI 3730×l DNA sequencer (Applied Biosystems) (Supplemental Table 6). Sanger sequencing of PCR amplicons was performed on the originally sequenced sample as well as up to five additional affected and unaffected individuals from the same pedigree. Sequencing data were analyzed using Sequencher 5.0 (Gene Codes Corp.).
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