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17 protocols using 96 well black plate

1

Differentiated L6 Myoblast Glucose Uptake

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L6 myoblast cell line originally isolated from primary cultures of rat thigh was obtained from National Centre for Cell Sciences (NCCS), Pune, India. Differentiated L6 myoblast cell line is the best characterized cellular model of skeletal muscle origin to study glucose uptake and GLUT4 translocation. L6 myoblasts were maintained in DMEM supplemented with 10% FBS, 10% antibiotic-antimycotic mix at 37°C under 5% CO2 atmosphere. Cells were grown at a density of 1x104 cells/well on 96-well black plates (BD Biosciences, Franklin Lakes, BJ) and 12-well plates (Costar, USA) for the immunofluorescent staining study and glucose uptake assay, respectively.
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2

Cellular Uptake of Branched Polymers

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Cellular uptake studies of branched
polymers were carried out by fluorescence imaging of adherent cells.
The cells were seeded at a density of 5 × 103 cells/well
of 96-well black plates (BD Biosciences) for the purpose. After 36
h from seeding, the cells were first washed twice with Hanks’
balanced salt solution (HBSS) to remove DMEM. Then, the cells were
incubated with different concentrations of branched polymers in HBSS
for 1 h. Subsequently, the cells were washed thrice with HBSS and
subjected to live cell imaging. Images were collected by the high-content
spinning disk facility (BD Pathway 855; BD Biosciences) using AttoVision
1.5.3 software. For imaging cellular uptake of SSPLLA, 488/10 nm excitation
filter and 515 nm long pass (LP) emission filter were used. For System
Support Package Components List (SSPCL), 360/10 nm excitation filter
and 420 nm LP emission filter were used. Imaging was done using a
high-content spinning disk facility from BD Biosciences. It is a fluorescence
microscope (BD Pathway 855) connected to an image analysis package
(AttoVision 1.5.3 software).
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3

Quantifying Zinc in Bronchoalveolar Lavage

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BAL were centrifuged and supernatants frozen at –80°C until assayed for Zn. BAL Zn was assayed by a Zinquin-based fluorometric technique [32] (link) as follows. Briefly, 100 µL of BAL samples (or stock Zn sulphate solutions) were added in triplicates to wells of 96-well black plates (BD Biosciences, North Ryde, NSW, Australia). To these were added 100 µL of Zinquin Assay buffer (Chelex treated, Zn-free 1X Hank’s balanced salt solution with 0.3 mg/ml ovalbumin and 10 µM Zinquin ester. After 40 min incubation at room temp in the dark, fluorescence was read using excitation filter (355 nm) and emission filter (510–10 nm) in a FLUOstar Optima fluorescence plate reader (BMG Labtech, Mornington, Victoria, Australia) and converted to Zn concentration from a standard curve.
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4

Angiogenesis Assay for Endothelial Progenitor Cells

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An angiogenesis assay plate (BD Pharmingen) was used to assess the angiogenetic ability of EPCs. 96-well black plates (BD Pharmingen) with clear bottom uniformly coated with BD Matrigel Matrix were incubated for 30 minutes at 37°C with 5% carbon dioxide. The EPCs were added at 1 × 105/well at different time points. The samples were incubated for 24 hours at 37°C with 5% carbon dioxide. For each plate, 6.25 mL Hank's balanced saline solution (HBSS) (BD Pharmingen) was mixed with 20 μL dimethyl sulfoxide (BD Pharmingen) and 50 μg Calcein AM (BD Pharmingen). After incubation, the medium was carefully removed from the plates. The plates were washed by adding 100 μL HBSS to each well, and the number of EPC formed tubes was counted by fluorescence microscopy (IX71; Olympus, Tokyo, Japan).
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5

Culturing Human Colon Cancer Cells

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The human colon cancer cells (SW480) were obtained from ATCC (American Type Culture Collection, Manassas, United States) were maintained in DMEM supplemented with 10% FBS, 1% antibiotic–antimycotic mix at 37°C under a humidified 5% CO2 and 95% air atmosphere. Cells were exposed to 0.25% trypsin-EDTA and harvested cells were seeded at a density of 1 × 104 cells/well on 24 well-plates, 6-well plates (Costar, United States) and 96-well black plates (BD Biosciences, Franklin Lakes, NJ, United States) for different assays.
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6

Branched Polymer Fluorescence Intensity Assay

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Fluorescence intensity measurements
were also carried out in adherent cells. The procedure adopted was
the same as that of the imaging protocol. For the analyses, a multimode
reader (BioTek) was used. The cells were seeded at a density of 5
× 103 cells/well of 96-well black plates (BD Biosciences)
for this purpose. After 36 h from seeding, the cells were first washed
twice with Hanks’ balanced salt solution (HBSS). Then, the
cells were incubated with different concentrations of branched polymers
in HBSS for 1 h. Subsequently, the cells were washed thrice with HBSS
and subjected to a fluorimeter using a fluorescence microplate reader
(Model: Synergy-4 Multimode reader, BioTek).
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7

Cellular Uptake of Graphene Quantum Dots

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The cellular uptake studies of the
GQDs were executed by fluorescence
imaging of HeLa cells. The cells were seeded at a density of 5 ×
103 cells/well of 96-well black plates (BD Biosciences)
for the purpose. After 36 h of seeding, the cells were incubated with
GQDs (25 μg/mL) in HBSS for 4 h. Twenty five micrograms per
milliliter was chosen for cellular uptake studies as at this concentration
maximum cell viability was observed. Subsequently, cells were washed
thrice with HBSS to remove the unbound particles. Images of the cells
were collected by a high-content spinning disk facility (BD Pathway
855; BD Biosciences) using AttoVision 1.5.3 software. The images were
taken at 40× magnification, using A360/10 excitation filter and
435 LP emission filter.
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8

HUVEC Culture and Resveratrol Effects

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Human umbilical vein endothelial cells (HUVECs) were obtained from Cell Applications (Cell Applications, San Diego, CA, USA) and cultured as previously described [43 (link)]. HUVECs were sub-cultured at a split ratio of 1:2 and used within three passages before cell viability was checked using trypan blue. Unless not otherwise specified, cells were plated in 96-well black plates (BD Falcon, Franklin Lakes, NJ) and processed for experiments in Medium M199 containing 5% FCS plus the different treatments. RES 10 mM stock solution was prepared in dimethyl sulfoxide (DMSO); final DMSO concentration in the diluted treatment media was less than 0.1%. DMSO (less than 0.1%) was used as a vehicle control. To investigate the involvement of ROS and NADPH oxidase in the RES-induced cellular effects, in selected experiments, cells were pretreated for 1 h with either 100 µM of the broad antioxidant Tempol [50 (link)] or with 10µM of the flavin-oxidase inhibitor Diphenyleneiodonium (DPI) [49 (link),51 (link),52 (link)]. The involvement of PKC in HUVECs response to RES treatment was investigated by using 2.5 µM of the broad PKC inhibitor chelerythrine (CHE) [53 (link),54 (link)].
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9

Cell Proliferation Assay Protocol

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ALL cells were plated at 1000 cells/well in 96-well black plates (BD Falcon) in sextuplicate. Cell mass was measured using CellTiter-Glo (Promega) and a BMG plate-reader at each time point. Results shown are the mean of 3 independent experiments for time points between 0–6 days and 2 experiments for day 8 with error bars representing SEM. Two-tailed t-tests with equal variance were performed and the raw p-values from the t-test were adjusted for multiplicity using Holm’s method (68 ). Analysis was performed by the Biostatistics & Quantitative Sciences Shared Resource at the University of Florida.
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10

Quantifying Apoptosis in Adherent Cells

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Cell apoptosis was assessed by using the fluorimetric kit APOPercentage (Biocolor Ltd., Carrickfergus, UK) following the protocol provided by the manufacturer. This assay has been employed with several adherent cell lines including endothelial cells [37 (link),38 (link)] and uses a dye selectively imported by cells that are undergoing apoptosis. Necrotic cells cannot retain the dye and, therefore, are not stained. HREC cells were treated as previously described in the “cell culture and treatment” section and the apoptosis assay was performed at day 6 of treatment in 96-well black plates (BD Falcon). The APOPercentage dye 3,4,5,6,-tetrachloro-2′,4′,5′,7′-tetraiodofluorescein was added to each well (dilution 1:10) and cells were incubated for 30 more min at 37 °C in a cell incubator. After thoroughly washing, 100 µL of APOPercentage dye release reagent was added to each well, and the cell-bound dye recovered into solution was measured using a GENios plus microplate reader (Tecan) with excitation and emission of 530 and 580 nm, respectively. Results were calculated as the means ± SD of five measurements and expressed as a percentage of untreated control cells.
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