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Lc3 1 2

Manufactured by Santa Cruz Biotechnology
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LC3-I/II is a protein marker commonly used in cellular and molecular biology research. It is involved in the process of autophagy, a crucial cellular mechanism for the degradation and recycling of damaged or unnecessary cellular components. LC3-I and LC3-II are the two forms of the LC3 protein, and their relative levels can be used to monitor the progression of autophagy.

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8 protocols using lc3 1 2

1

Cardiac Protein Expression Analysis

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Hearts were harvested and homogenized in lysis buffer for Western analysis. Following immunoblotting, the membranes were blotted with HIF1-α, apelin, gp91phox (1:1000, Cell Signaling, MA, USA), PHD2, NF-κb-p65, beclin-1 and LC3-I/II (1:1000, Santa Cruz, CA, USA) antibodies. The membranes were then washed and incubated with a secondary. Antibody coupled to horseradish peroxidase and densitometric analysis was carried out using image acquisition and analysis software (TINA 2.0).
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2

Immunoblotting Analysis of Cellular Signaling Pathways

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Briefly, lysis was performed with NP40 lysis buffer. The lysates were electrophoresed on 4–12% NuPAGE Bis-Tris gels in MOPS SDS running buffer and transferred onto nitrocellulose membranes (Invitrogen) overnight. The membranes were blocked in 3% BSA and incubated with indicated primary antibodies where specified for: mouse CLEC16A, PINK1 (Abgent), GFP, Nrdp1 (Novus Biologicals), TOM20 (ProteinTech), Parkin, p62/SQSTM1, LC3 I/II, ATG16L1, cytochrome c, caspase-9, p-ERK1/2 and EK1/2 (Santa Cruz), cleaved Caspase-3, p-Akt (ser473), p-Akt (Ser308) and total Akt (Cell signaling). The membranes were washed and incubated with a respective mouse/rabbit secondary antibody and bound antibody was detected with WesternBright ECL kit (Advansta). Membranes were stripped and re-probed for β-actin as loading control.
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3

Cardiac Protein Expression Analysis

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Hearts were harvested and homogenized in lysis buffer for Western analysis. Following immunoblotting, the membranes were blotted with HIF1-α, apelin, gp91phox (1:1000, Cell Signaling, MA, USA), PHD2, NF-κb-p65, beclin-1 and LC3-I/II (1:1000, Santa Cruz, CA, USA) antibodies. The membranes were then washed and incubated with a secondary. Antibody coupled to horseradish peroxidase and densitometric analysis was carried out using image acquisition and analysis software (TINA 2.0).
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4

Evaluation of Autophagy Markers in hDPSCs

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Proteins (30 μg) derived from treated and untreated hDPSCs with and without 0.1 µL of rapamycin (Sigma Aldrih, Milan, Italy) were processed as previously described [42 (link)]. All antibodies used for the Western blot procedure were purchased from Santa Cruz Biotechnology. After protein separation, saturated sheets were incubated overnight at 4 °C with P62 (1:200, Santa Cruz Biotechnology), LC3-I/II (1:1000, Santa Cruz Biotechnology), ERK (1:750, Santa Cruz Biotechnology), pERK (1:750, Santa Cruz Biotechnology), Beclin1 (1:1000, Santa Cruz Biotechnology), and β-actin (1:1000, Santa Cruz Biotechnology).
Samples were then washed and incubated in secondary antibody diluted 1:1000 in 1× TBS, 5% milk, 0.05% Tween-20. Protein-specific bands were visualized via the electrochemiluminescence (ECL) method [43 (link)].
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5

Protein Expression Analysis in Hearts

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The hearts or EPCs were harvested and homogenized in lysis buffer for Western blot analysis. Total protein concentrations were determined using a BCA protein assay kit (Pierce Co, IL). Fifteen µg of protein were subjected to SDS-PAGE on 10% polyacrylamide gels and transferred to a nitrocellulose membrane. The blot was probed with Sirt3, VEGFR2, Akt and eNOS (1∶1000, Cell Signaling, MA), VEGF, CXCR-4, gp91phox, p47phox, LC3-I/II and beclin-1 (1∶1000, Santa Cruz, CA) antibodies. The membranes were then washed and incubated with a secondary antibody coupled to horseradish peroxidase and densitometric analysis was carried out using image acquisition and analysis software (TINA 2.0).
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6

Western Blotting Analysis of Autophagy and Signaling Proteins

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The preparation of cell extracts and the following Western blotting were performed according to the standard instructions. Briefly, a total of 25 μg of proteins was loaded and then separated through sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The proteins were then electrotransferred to nitrocellulose membranes (Amersham, Little Chalfont, UK). The membranes were blocked with 3% nonfat milk for 1 h at 37°C. After washing with Tris-buffered saline with Tween (TBST) three times, the membranes were then incubated with primary antibodies against (microtubule-associated protein 1 light chain 3) LC3I/II, Beclin1, p62, AMPKα, Ras, Raf, MEK, ERK1/2, and β-actin (Santa Cruz Biotechnology) at 4°C overnight. The peroxidase-conjugated secondary antibody (1:1,000; Boster Corporation, Wuhan, Hubei, P.R. China) was then used and incubated for 1 h at room temperature. The immunoreactive protein bands were then observed using an enhanced chemiluminescence detection system (Amersham). The expression level of proteins was normalized to β-actin.
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7

Western Blot Analysis of Protein Targets

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Antibodies against VDAC1, Cytc, Hsp60, Parkin, PINK1, p62, p70s6k, P-p70s6k, and LC3 I/II were obtained from Santa Cruz Biotechnology (Dallas, TX, US); antibody to β-actin and all secondary antibodies were obtained from Proteintech (Wuhan, Hubei, China). The specific assay procedures were as previously described27 (link).
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8

Proteomic Analysis of STAT6 Signaling

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Proteins of cells and tissues were isolated using a RIPA buffer containing protease and phosphatase inhibitor cocktail. Total protein was quantified using the BCA method (Fude Biological Technology, China, FD2001). Equal amounts of protein from each group were separated through an SDS-polyacrylamide gel. The following antibodies were used: STAT6 (sc-374021), p-STAT6 (sc-136019), Arg-1 (sc-166920), TGF-β1 (sc-146), α-SMA (sc-53142), FN (sc-18827), LC3I/II (sc-398822), SQSTM1 (sc-28359), CPT-1α (sc-393070), PPARα (sc-398394), and GAPDH (sc-32233) from Santa Cruz Biotechnology. FTO (AF6936) and N6-Methyladenosine (m6A) Rabbit Polyclonal Antibody (AF7407) were from Beyotime. Protein half-life assays were performed according to our previous protocol (22 (link)). Briefly, cell lysates from the control or Cana group were collected at different time points after cycloheximide (CHX) administration and subjected to immunoblot analyses with the anti-STAT6 and anti-GAPDH antibodies. The prestained protein marker (Vazyme Biotech Co., Ltd., MP102-01) was used to identify the specific bands.
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