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8 protocols using perhexiline

1

Metabolic Profiling of Perhexiline-Treated Cells

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The indicated EOC cells were seeded in 96-well plates (2 × 104 cells) and treated with 10 μM Perhexiline for 24 h. The ATP, NADH and NADPH levels were determined after treatment with Perhexiline (Sigma-Aldrich) by using the CellTiter-Glo Luminescent Cell Viability Assay (Promega), NAD/NADH Assay kit (Abcam, ab65348) and NADP/NADPH Quantitation Kit (Sigma-Aldrich, MAK038-1KT) according to the manufacturer's instructions, respectively.
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2

Androgen Deprivation and ECI2 Knockdown

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Cells were obtained from ATCC and maintained according to ATCC guidelines. To simulate androgen deprivation, cells were kept in phenol-red free media supplemented with charcoal-stripped serum. Knockdown of ECI2 was performed with RNAiMAX reagent (Thermo Fisher Scientific) according to manufacturer's instructions. ECI2 targeting siRNAs were obtained from Qiagen (SI04202282 and SI04201848). Perhexiline was purchased from Sigma (catalogue number: SML0120-10MG). More detailed protocols for cell lysate preparation, Oil Red O staining (obtained from Sigma, catalogue number: O1391-250ML) and Lipid Tox staining (obtained from Life Technologies, catalogue number: H34475) are available in Supplementary Materials.
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3

Investigating Perhexiline and Trichostatin A

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Perhexiline was purchased from Sigma-Aldrich (Germany), and Trichostatin A (TSA,) purchased from Selleck Chemicals.
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4

Cultivation and Assay of Pathogenic Amoebae

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N. gruberi strain NEG-M (ATCC 30224) was grown axenically at 25°C in modified PYNFH medium (peptone, yeast extract, yeast nucleic acid, folic acid, 10% heat-inactivated fetal bovine serum, 100 units/ml penicillin, 100 μg/ml streptomycin, and 40 μg/ml gentamicin) (ATCC medium 1034), as described before (19 (link)). N. fowleri strain HB-1, kindly provided by Hana Pecková (Institute of Parasitology, Biology Center CAS, Czech Republic), was grown axenically at 37°C in Bacto Casitone medium. Experiments with N. fowleri were conducted at biosafety level 2 (BSL 2) according to the ATCC guidelines and as specified by the Charles University guidelines. Bacto Casitone medium is composed of 2% Bacto Casitone, 10% heat-inactivated fetal bovine serum, penicillin (100 U/ml), and streptomycin (100 μg/ml). All experiments were performed using trophozoites harvested during logarithmic-phase growth by repeatedly tapping cell culture flasks containing amoebae to detach trophozoites. Amphotericin B (AMB), etomoxir (ETO), miltefosine (MIL), thioridazine (TDZ), orlistat (ORL), perhexiline (PHX), and valproic acid (VPA) were purchased from Sigma. CellTiter-Glo 2.0 Cell viability assay was purchased from Promega. Translucent flat-bottom 96-well plates were purchased from Greiner Bio-One. Black flat-bottom 96-well plates were purchased from Thermo Fisher Scientific.
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5

Radioactive Fatty Acid Metabolism

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[9,10-3H(N)]- and [1-14C]-palmitic acids were obtained from Perkin Elmer (Boston, MA). Oxfenicine, perhexiline, ranolazine, TMZ, GW6471, GSK3787, GW9662, L-carnitine, AICAR, 2-DG, and sodium palmitate were from Sigma-Aldrich (St. Louis, MO). Essentially fatty acid-free BSA was obtained from Roche (Indianapolis, IN). Etomoxir and BAY-876 were purchased from Chemgood (Richmond, VA). FBS was from Atlanta Biologicals (Atlanta, GA). Glucose and cell culture reagents were obtained from Thermo Fisher Scientific (Waltham, MA).
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6

Synergistic Effects of FAO Inhibitors and Gemcitabine on PDAC Cells

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We tested the sensitivity of PDAC cells to three different compounds targeting the Fatty Acid Oxidation (FAO) pathway: etomoxir, perhexiline, and trimetazidine (all provided by Sigma-Aldrich, Saint-Quentin Fallavier, France), and to the chemotherapeutic gemcitabine (Gemzar, Eli Lilly & Co). Cells were seeded in 96-well plates (5,000 cells per well) and 24 hours later, the medium was supplemented with increasing concentrations of the drugs in triplicates. For the combination treatments, we used perhexiline at 5 μM with increasing doses of gemcitabine. Viability was determined 72 hours later by the Crystal violet assay, which is independent from cell metabolism. For this, cells were fixed in glutaraldehyde (1%), washed twice with PBS, stained with Crystal violet (0.1%) for 10 min, and then washed three times with PBS. Crystals were solubilized in SDS (1%), and absorbance was measured at 600 nm using an Epoch-Biotek spectrophotometer.
We calculated the synergistic effect of the combination treatments as previously reported.28 (link) To calculate the predicted values, the cell viability of gemcitabine-treated cells was multiplied by the cell viability of perhexiline-treated cells. A synergistic effect was considered when the observed value is lower than the predicted value.
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7

Comprehensive Catalog of Pharmaceutical Compounds

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Amikacin, caffeine, citrate, clozapine, dexamethasone, glimepiride, imipramine, ketotifen, lactose, sorbitol, and theophylline were purchased from Wako Pure Chemical Industries (Osaka, Japan). 3-Acetamidophenol, amiodarone, amitriptyline, ascorbate, perhexiline, and tamoxifen were purchased from Sigma-Aldrich (St. Louis, MO, USA). Chlorpromazine, desloratadine, isoproterenol, loratadine, maprotiline, and tilorone were purchased from Tokyo Chemical Industries (Tokyo, Japan). All compounds were of the highest available commercial grade.
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8

Sourcing of Pharmaceutical Compounds

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Flucloxacillin (FLX), levofloxacin (LVX), erythromycin (ERY), ampicillin (AMP), streptomycin (SM), perhexiline (PER), troglitazone (TRO), amiodarone (AMI), acetaminophen (APAP) and methylthiazoletetrazolium (MTT) were purchased from Sigma (St. Quentin Fallavier, France). Macitentan (MAC) and sitaxentan (SIT) were provided by Alsachim (St. Illkirch-Graffenstaden, France). Bosentan (BOS) was obtained from Sequoia Research Products (Pangbourne, U.K). Fasudil (FAS) (HA-1077) was from BPS Bioscience (Le Perray en Yvelines, France). Ambrisentan (AMB) was a gift from MSN Laboratories (Sanath Nagar, India). Other chemicals were of reagent grade.
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