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6 protocols using thapsigargin

1

Investigating Cellular Stress Responses

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Dimethyl sulfoxide (DMSO) and MG132 were from Fisher Scientific. DMSO was used as a vehicle in this study. Kainic acid was from Alomone Labs. Saline was from Hanna Pharmaceutical Supply Co., Inc. Pifithrin and Thapsigargin were from AdipoGen. Cycloheximide was from Sigma. The antibodies used in this study were purchased from Santa Cruz Biotechnology (anti-Mdm2), GenScript Corporation (anti-Gapdh), and Cell Signaling (anti-p-Mdm2, anti-p53 and anti-ubiquitin). HRP-conjugated secondary antibodies were from Jackson Immunoresearch and Cell Signaling.
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2

Ionomycin-Induced Calcium Signaling in Spinal Cord

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ionomycin calcium salt was purchased from Tocris Bioscience (Minneapolis, MN, USA) and used per the manufacturer’s recommendations. ionomycin was dissolved in DSMO first to make a 2 mM stock concentration. ionomycin was then dissolved in 2 mM Ca2+ aCSF at a final concentration of 1, 3, or 5 µM and perfused for 1 hour. Similarly, ionomycin was dissolved in zero Ca2+ aCSF for a final concentration of 3 µM and perfused for 1 hour. After 1 hour, the ionomycin buffer was washed out with either zero or normal 2 mM Ca2+ aCSF and images were collected every 15 minutes for an additional hour. To inhibit store-operated Ca2+ entry (SOCE), we pretreated spinal cords for 30 minutes with YM-58483 (an established blocker of SOCE; 500 nM; Tocris Bioscience) prior to ionomycin perfusion in aCSF. Thapsigargin, an irreversible Sarco-Endoplasmic Reticulum Ca2+ ATPase inhibitor, was purchased from AdipoGen Life Sciences (San Diego, CA, USA) and used per the manufacturer’s recommendations. Thapsigargin was dissolved in DMSO to make a 5 mM stock solution and further diluted in 2 mM Ca2+ aCSF to make a final concentration of 1 µM to pretreat the spinal cord for 60 minutes to empty calcium stores.
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3

Quantifying Neural Stem Cell Proliferation

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To monitor NSC proliferation, we analyzed NSCs by immunostaining of mouse anti–Ki-67 antibody (BD Pharmingen) and Click-IT EdU detection (Invitrogen) after 4 h exposure to EdU, and co-stained with rabbit anti-Sox2 antibody (EMD Millipore) or DAPI (Sigma) to count all cells. Cell images were obtained on AF6000 (Leica) and BZ-X (Keyence). Cell counting was performed using the ImageJ software for images captured on the AF6000, and Hybrid cell count (Keyence), an algorithm for cell counting, for images captured on the BZ-X. Six to eight images were collected under each condition. Inhibitors used for cell culture were obtained from the indicated suppliers: bafilomycin A1 (Sigma), SAR405 (Cayman Chemical), Dynasore (Adipogen), thapsigargin (Adipogen), nocodazole (Adipogen), DAPT (Calbiochem), AG1478 (Cell Signaling Technology), Torin-1 (Cayman Chemical), and rapamycin (Wako). To measure protein stability, cells were incubated with 10 µg/ml cycloheximide (Sigma) to block protein synthesis.
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4

Apoptosis Pathway Antibody Panel

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Antibodies used include anti-Bid (Luo et al.12 (link)), anti-Bim (Santa Cruz, Biotechnology, Inc, Dallas, TX, USA, Sc-11425, Calbiochem, San Diego, CA, USA, #202000), anti-Puma (Santa Cruz, Sc-28226, Pro-Sci, Inc, Poway, CA, USA, 3041), anti-Bad (Santa Cruz, Sc-8044), anti-Noxa (Santa Cruz, Sc-56169 Novus Biologicals, Littleton, CO, USA, IMG-349A), anti-Bax (Santa Cruz, Sc-493), anti-Bak (Santa Cruz, Sc-832, Cell Signaling Technology, Danvers, MA, USA, #3814), anti-Bcl-2 (Santa Cruz, Sc-509), anti-Bcl-xL (Santa Cruz, Sc-8392), anti-Mcl-1 (Santa Cruz, Sc-819), anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA, A5441), anti-PARP (Cell Signaling Technologies, #9524), anti-GFP (Santa Cruz, Sc-459), and anti-p53 (Santa Cruz, Sc-393). z-VAD(OMe)-FMK was purchased from MP Biomedicals (Santa Ana, CA, USA). Thapsigargin was purchased from Adipogen. Corp (San Diego, CA, USA) ABT-737 was purchased from Cayman Chemical (Ann Arbor, MI, USA). Human recombinant TRAIL was made as previously described.61 (link)
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5

Calcium Signaling in Claycomb Cells

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Claycomb cell culture medium was purchased from Sigma-Aldrich. FBS (fetal bovine serum), PBS (phosphate-buffered saline), HBSS (Hanks’ balanced salt solution), and penicillin/streptomycin antibiotic were purchased from Invitrogen/Thermofisher Scientific Pittsburgh, PA, USA. Other reagents used include BTP2 and ML204 (Millipore Sigma, St. Louis, MO, USA), EPI (Alfa Aesar, Haverhill, MA, USA), thapsigargin (TG, Adipogen, San Diego, CA, USA), fura-2 AM (Biotium 50033, Fremont, CA, USA), DAPI (Invitrogen D357, Carlsbad, CA, USA), and phalloidin (Enzo BML-T111, New York, NY, USA).
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6

Neuronal ER Stress Modulation Assay

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Bovine serum albumin (BSA) was from Fisher Scientific (catalog: BP9706-100). Dimethyl sulfoxide (DMSO) was from Fisher Scientific (catalog: BP231-100). Thapsigargin was from Adipogen (catalog: AG-CN2-0003). Salubrinal was from Sigma Aldrich (catalog: SML0951). Saline was from Hanna Pharmaceutical (catalog: NC9054335). Kainic acid was from Cayman Chemical Company (catalog: 78050). The antibodies used in this study were purchased from ProteinTech (anti-Gapdh, RRID: AB_2107436), AbClonal (anti-XBP1 [RRID: AB_2757016] and anti-ATF6 [RRID: AB_2801582]), Abcam (anti-Synapsin I [RRID: AB_2200097], anti-PSD-95 [RRID: AB_303248], and anti-Map2 [RRID: AB_2138147]) and Cell Signaling (anti-Nedd4-2 [RRID: AB_1904063], anti-eIF2α [RRID: AB_10692650], anti-phospho-eIF2α [RRID: AB_2096481], anti-PDI [RRID: AB_2156433], anti-COX IV [RRID: AB_2797784], anti-IRE1α [RRID: AB_823545], and anti-ATF4 [RRID: AB_2616025]).
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