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7 protocols using cd45 alexa fluor 700

1

Multiparameter Flow Cytometry Analysis

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All fluorochrome-conjugated antibodies used are listed in “fluorochrome-target” format as follows: eFluor 450-CD122, PE-FoxP3, Allophycocyanin-CD4, PerCP-eFluor 710-TNF-α, PE-Cy7-Thy1.1, PE-Cy7-CD62L and PE-Cy7-IFN-γ were from eBioscience (San Diego, CA); V500-CD44, FITC-CD45.1, FITC-TCRβ, PE-CD25, Alexa Fluor 700-CD45.2, Alexa Fluor 700-CD62L, PE-Cy5-CD44, PE-Cy7-CD4 and Allophycocyanin-Cy7-TCRβ were from BD Biosciences (San Diego, CA); PE-Texas Red-CD4 were from Invitrogen (Carlsbad, CA). PE-PBS-57 (analog of α-Galactosylceramide (α-GalCer)) loaded CD1d tetramer was from the NIAID Tetramer Facility. Cells were stained for flow cytometric analysis as previously described (16 (link)). Briefly, live cells are incubated with Fc block (eBioscience) in 2% fetal bovine serum containing PBS, followed by staining with indicated antibodies against surface markers; to stain cytokines, cells were further fixed in 4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA), permeabilized and stained with cytokine antibodies using PBS containing 0.3% saponin (Sigma). Flow data were acquired a on a FC500 (Beckman Coulter, Brea, CA) or LSRII system (BD Biosciences), and analyzed using FlowJo software (Tree Star Inc., OR).
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2

Multi-Color Flow Cytometry Analysis of Murine Immune Cells

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All fluorochrome-conjugated antibodies used are listed in “fluorochrome-target” format as follows: FITC-IL-17A, PE-Foxp3, Allophycocyanin-IFN-γ, Allophycocyanin-Cy7-CD4, PerCP-Cy5.5-CD25, PE-Cy5-ICOS, PerCP-eFluor 710-TNF-α, and PE-Cy7-Thy1a were from eBioscience (San Diego, CA); FITC-CD25, FITC-CD45.1, FITC-Thy1a, PECF594-CD4, PE-CF594-CD8α, Allophycocyanin-ICOS, Alexa Fluor 700-CD45.2, PECy7-CD4 and Allophycocyanin-Cy7-TCRβ were from BD Biosciences (San Diego, CA); Alexa Fluor 610-CD4 and PE-Texas Red-CD8α were from Invitrogen (Carlsbad, CA); Brilliant Violet 421-NRP1, Alexa Fluor 700-CD45.1 and PE-Cy7-CD62L were from Biolegend (San Diego, CA), Foxp3 staining buffer kit was from eBiosciences. To detect cytokines, cells were stimulated with PMA/Ionomycin and analyzed as previously described (33 ).
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3

Isolation and Characterization of Mouse Intestinal Lamina Propria Cells

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Mouse intestinal lamina propria cells were isolated using a Lamina
Propria Dissociation Kit (130-097-410) purchased from Miltenyi biotec (Bergisch,
Gladbach, Germany) according to the manufacturer’s protocol. The prepared
cells were then injected into recipient mice intravenously. For flow cytometry,
the prepared cells were then blocked with 1 μg/million cells 2.4G2
(anti-CD16/anti-CD32 ATCC) in 100μl FACS buffer for 5 minutes at
4°C, followed by 1-time wash of FACS buffer to remove residue 2.4G2 and
then incubated in conjugated mAbs Alexa Fluor 700-CD45.2, FITC- CD103, PE-
F4/80, PerCP-cy5.5- CD11b, APC-MHC class II, PE-Cy7- CD11c, and Pacific
blue-CD103 (BD Biosciences). The labeled cells were then washed 3 times in FACS
buffer and then analyzed using a Becton-Dickinson LSR II flow cytometer. Data
were analyzed using FlowJo (TreeStar, Ashland, OR) (Zhang et al., 2014 (link)).
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4

Characterization of Tumor Cell Spheroids

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MCF-7 and MDA-MB-231 cells were purchased from ATCC- LGC Standards GmbH and tumor cell spheroids before and after immune cell infiltration were washed with PBS and blocked with 4% FcR Blocking Reagent (Miltenyi Biotec) prior to antibody staining using EpCAM (CD326, Brilliant Violet421, BD Biosciences) and CD45 (Alexa Fluor 700, BD Biosciences). For tumor cell proliferation, cells were stained with Ki-67 (Anti-human Ki-67 APC, Miltenyi Biotec). To discriminate viable from apoptotic and necrotic cells, spheroids were dissociated as described before and stained with FITC-labeled Annexin V (Immunotools, Friesoythe, Germany) and propidium iodide (PI; Fluka, Buchs, Switzerland). Cells were analyzed with a LSRII/Fortessa flow cytometer (BD Biosciences) and analyzed using FlowJo V10 (BD Biosciences).
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5

Comprehensive Flow Cytometry Analysis of BALF Cells

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Flow cytometry on BALF cells was performed as described previously(63 ). Briefly, after pelleting and removal of cell-free BALF supernatant, the cells were incubated in ammonium-chloride-potassium (ACK) lysis buffer (150 mM NH4Cl, 10 mM KHCO3, 0.1 mM Na2EDTA in H2O, pH 7.2–7.4) for 5 minutes at room temperature to lyse red blood cells. Cells were then washed twice with PBS and stained with LIVE/DEAD Fixable Aqua Stain (Thermo Fisher) for 30 minutes at room temperature and protected from light. After this, cells were washed twice with PBS and resuspended in cell staining buffer (PBS with 2% newborn calf serum) containing the following anti-mouse antibodies (30 minutes at 4°C): CD45-Alexa Fluor 700 (clone: 30-F11, BD), CD11b-PE (clone M1/70, BD), Siglec-F-APC-Cy7 (clone: E50–2440, BD), CD11c-PE-Cy7 (clone HL3, BD), CD64-BV650 (clone: X54–5/7.1, BD), Ly6G-APC (clone 1A8, BD). Flow cytometry analysis was performed using an LSR Fortessa Cell Analyzer (BD) at the University of Pittsburgh Unified Flow Core. Absolute cell counts (cells/mL) were determined using CountBright Absolute Counting Beads (Thermo Fisher). Data were analyzed using FlowJo version 10.8.0 (BD).
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6

Bronchoalveolar Lavage Fluid Analysis

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Animals were anesthetized and intubated before up to 10 mL/kg of sterile saline was instilled into the lungs. Suction was then applied to recover the instilled fluid. Usually up to 90% of the fluid instilled was recovered. The collected BAL fluid was then passed through a 100 µm cell strainer to remove big chuncks. BAL cells were collected for analysis or cryopreservation after spinning down. For flow cytometric analysis, the BAL cells were first incubated with Fc Receptor blocking reagent (Miltenyi Biotec), and then stained with viability dye (Invitrogen) and antibody mixtures including CD45- Alexa Fluor 700, CD3-PE-Cy7, CD4-BV605, CD8-BV800 (all from BD Pharmingen), CD14-BV450, CD16-BV711, HLA-DR-APC-Cy7, CD11b-PE-Cy5, and CD163-PerCP (all from Biolegend). Data acquisition was performed on an LSRII flow cytometer, and FlowJo software (Tree Star Inc.) was used for data analyses.
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7

Multiparametric Flow Cytometry Blood Analysis

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Samples of fresh ACD-anticoagulated whole blood were stained as previously described (36) with the following monoclonal antibodies: CD3-Pacific Blue, CD56-APC, CD15-V500, CD4-FITC, CD20-APC-Cy7, CD123-PE, CD45-Alexa Fluor 700, CD33-PE-Cy7 (BD Biosciences); and CD8ß-ECD (Beckman Coulter). Monoclonal antibodies (mAb) were added to 100 ml of blood according to the manufacturer's directions and incubated at RT for 15 min. Red cells were then lysed at RT for 10 min with 0.5 mL Optilyse C (Beckman Coulter). Cells were washed once with 2 mL PBS and resuspended in 250 mL of 0.5% paraformaldehyde/PBS. A total of 200,000-500,000 events were collected on the LSR II. Manual gating was used to identify CD151 SSC high granulocytes; CD45 high CD33-SSC low lymphocytes; CD331 SSC high monocytes; and CD45 negative debris using FlowJo. The gated lymphocytes were subsequently exported as an FCS file using FlowJo for further analysis in SOPHE (see below).
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