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6 protocols using recombinant human ifn α

1

PBMC Isolation and Activation Protocol

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Healthy donors had abstained from taking drugs for 2 weeks prior to the study. In this study PBMC from nine different donors were investigated. PBMC were freshly isolated from peripheral blood using Histopaque-1077 (Sigma-Aldrich, Taufkirchen, Germany) according to the manufacturer’s instructions. For cultivation, PBMC were routinely resuspended in Roswell Park Memorial Institute (RPMI) 1640 supplemented with 10 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) and 1% human serum (Invitrogen by Life Technologies, Darmstadt, Germany) and seeded at 3 × 106 cells/ml in round-bottom polypropylene tubes (Greiner, Frickenhausen, Germany). The protocol was approved by the ‘Ethik Kommission’ of the University Hospital Goethe-University Frankfurt. PBMC were activated by B. burgdorferi 297 (at 0.1 MOI), CpG type A (ODN2216: 5′-ggGGGACGATCGTCgggggg-3′; InvivoGen, San Diego, CA, USA), recombinant human IFN-α (R&D Systems, Abingdon, UK), recombinant B18R (eBioscience, Frankfurt, Germany) or anti-human CD3 antibody (Biozol, Eching, Germany).
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2

Interferon stimulation of cell lines

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Human lung adenocarcinoma cells (A549), human immortalized keratinocytes (HaCaTs), mouse macrophage RAW 264.7 cells and Madin-Darby canine kidney (MDCK) cells were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). A549 cells were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin. MDCK and mouse macrophage RAW 264.7 cells were grown in DMEM supplemented with 10% FBS and 1% penicillin/streptomycin. Normal human dermal fibroblasts (HDFs) were purchased from Lonza, Basel, Switzerland, and grown in fibroblast basal medium (FBM) supplemented with FGM SingleQuots (Lonza). THP-1 human leukemia monocytes were cultured in RPMI 1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin and differentiated into macrophages in the presence of 100 ng/mL PMA (Sigma-Aldrich, St. Louis, MS, USA).
Recombinant human IFN-α, λ1, and λ2 were purchased from R & D Systems (Minneapolis, MI, USA), and IFN-β protein was obtained from PBL Assay Science (Piscataway, NJ, USA). Human IFN neutralizing monoclonal antibody and murine recombinant IFN-β protein were obtained from R & D Systems.
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3

Interferon Regulation of PD-L1 Expression

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GBM1 cells were cultured overnight at 1x105 cells/well. Cells were then treated with 100 pg of recombinant human IFN-α (R&D Systems), IFN-β (PBL Interferon Source), or IFN-γ (Peprotech) alone or in combination. After 24 hrs, cells were harvested and stained with anti-PD-L1-PE as above.
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4

Antibody Characterization and Validation

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The following antibodies were used throughout this study: anti-FKBP3 from Thermo Fisher (catalog no. PA5-19483); anti-HDAC1 (catalog no. ab280198), anti-HDAC2 (catalog no. ab219053), anti-H3K4ac (catalog no. ab176799), and anti-H3K18ac (catalog no. ab40888) from Abcam (Cambridge, UK); and anti-YY1 (catalog no. 46395) and anti-β-actin (catalog no. 4970) from Cell Signaling Technology (MA, USA). We purchased 2× Taq master mix (catalog no. P112) and high-fidelity PCR enzyme 2× Phanta Max master mix (catalog no. P515) from Vazyme (Nanjing, China). PMD18-T (catalog no. 6011) was purchased from TaKaRa (Beijing, China). Cell genome extraction kit (catalog no. DP304) and plasmid extraction kit (catalog nos. DP103, DP108, and DP117) were purchased from Tiangen (Beijing, China). Gel extraction kit (catalog no. CW2302) was purchased from CWBio (Nanjing, China). Luciferase and NanoLuc detection kits (catalog nos. E6110 and N1110, respectively) were purchased from Promega (Madison, USA). Recombinant human IFN-α (catalog no. 11200-1), recombinant human IFN-β (catalog no. 8499-IF), and recombinant human IFN-γ (catalog no. 285-IF) were purchased from R&D Systems (USA). Cell counting kit (CCK-8) and TUNEL apoptosis detection kit (fluorescein isothiocyanate [FITC]) were purchased from Yeasen (Shanghai, China).
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5

ELISA Assay for Anti-IFN Antibodies

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ELISA was performed as previously described (Bastard et al., 2020 (link)). In brief, 96-well ELISA plates (MaxiSorp; Thermo Fisher Scientific) were coated by incubation overnight at 4°C with 2 µg/ml recombinant human IFN-α, and recombinant human IFN-ω (R&D Systems). Plates were then washed (PBS/0.005% Tween), blocked by incubation with 5% nonfat milk powder in the same buffer, washed, and incubated with 1:50 dilutions of plasma from the patients or controls for 2 h at room temperature (or with specific mAbs as positive controls). Each sample was tested once. Plates were thoroughly washed. HRP-conjugated Fc-specific IgG fractions from polyclonal goat antiserum against human IgG (Nordic Immunological Laboratories) were added to a final concentration of 2 µg/ml. Plates were incubated for 1 h at room temperature and washed. Substrate was added, and the optical density was measured. A similar protocol was used to test for antibodies against 12 subtypes of IFN-α, except that the plates were coated with cytokines from PBL Assay Science (catalog no. 11002-1).
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6

Quantification of HIV-1 Inhibition Assays

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Recombinant human IFN-α was obtained from R&D Systems, Inc. The HIV-1 reverse transcriptase (RT) inhibitor azidothymidine (AZT); the chemical antagonist of CCR2, RS102895, Cytochalasin D (CytD) and paraformaldehyde were purchased from Sigma-Aldrich. Pertussis toxin (Bordetella pertussis, glycerol solution) was from Calbiochem. TURBO DNase I was from Ambion. The HIV-1 fusion inhibitor T20 peptide was a kind gift from Dr. Lai-Xi Wang at the Institute of Human Virology.
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