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14 protocols using trimethylorthoformate

1

Synthesis of S-((2-methoxy-1,3-dioxolan-4-yl)methyl) ethanethioate

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Example 17

Synthesis of S-((2-methoxy-1,3-dioxolan-4-yl)methyl) ethanethioate. S-(2,3-dihydroxypropyl) ethanethioate was prepared by the method described by Polster J. et al (J. Agric. Food Chem., 63, 1419-1432; 2015). The diol (10.21 g, 68 mmol) was dissolved in cyclohexane (Aldrich) at a concentration of 0.7 M in a round bottom flask containing a Teflon coated magnetic stirbar. Trimethyl orthoformate (1.5 eq, Aldrich) and a catalytic amount of p-toluenesulfonic acid (5 mol %, Aldrich) were added to the round bottom flask and the flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 45° C. After 2 hours, the reaction was complete and the flask cooled to room temperature, followed by concentration at reduced pressure on a rotary evaporator. The product was purified by silica gel column chromatography (conditioned with 1% triethylamine in 9:1 hexanes:ethyl acetate), eluting with a gradient of hexane:ethyl acetate (started from 9:1 hexanes:ethyl acetate). The title compound was isolated in 72% yield. The product was verified by characteristic peaks in the 1H and 13C NMR and by molecular ion in positive mode ESI/TOF mass spectroscopy ([M-OMe]+, 161.0 m/z).

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2

Synthesis of Fluorinated Dioxolane Compound

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Example 5

Synthesis of 2-methoxy-4-(3,3,4,4,5,5,6,6,6-nonafluorohexyl)-1,3-dioxolane. 5,5,6,6,7,7,8,8,8-nonafluorooctane-1,2-diol (1 eq., 65 mmol, 20 g, Polyorg Inc. (Leominster, Mass.)) was dissolved in 300 mL of cyclohexanes (Aldrich). Trimethylorthoformate (27.5 g, 260 mmol, 4 eq., Aldrich) was added to the flask along with a catalytic amount of Amberlyst 15 (H form, Aldrich) and a Teflon coated magnetic stirbar. The flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 45° C. The Amberlyst resin was removed by filtration and the filtrate concentrated at reduced pressure on a rotary evaporator. The residual mixture was purified by fractional distillation under reduced pressure (b.p.=89-105° C. at 10 mmHg), providing the title compound in 32% isolated yield. The product was verified by characteristic peaks in the 1H NMR and by molecular ion in ESI/TOF mass spectroscopy (M+1, 35.1 m/z).

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Synthesis of 1-((2-Methoxy-1,3-Dioxolan-4-yl)Methyl)-1H-Pyrrole

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Example 20

Synthesis of 1-((2-methoxy-1,3-dioxolan-4-yl)methyl)-1H-pyrrole. 3-(1H-pyrrol-1-yl)propane-1,2-diol (5.0 g, 35.4 mmol, Aurum Pharmatech) was dissolved in cyclohexane (Aldrich) at a concentration of 0.2M in a round bottom flask containing a Teflon coated magnetic stirbar. Trimethyl orthoformate (1.5 eq, Aldrich) and a catalytic amount of p-toluenesulfonic acid (5 mol %, Aldrich) were added to the round bottom flask and the flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 45° C. After 3 hours, the reaction was complete and the flask cooled to room temperature, followed by concentration at reduced pressure on a rotary evaporator. The product was purified by silica gel column chromatography, eluting with a gradient of hexane:ethyl acetate (starting from pure hexane). The title compound was isolated in 66% yield. The product was verified by characteristic peaks in the 1H and 13C NMR and by molecular ion in positive mode ESI/TOF mass spectroscopy ([M+H], 183.1 m/z.

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Detailed Synthesis and Characterization Protocol

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The following chemicals were used as received: trimethyl orthoformate (Z99%, Aldrich), thionyl chloride (Z97%, Aldrich), diisopropylamine (Z99%, Aldrich), phosphorus(V) oxidychloride (Z99%, Aldrich), 10-undecenal (Z90%, Aldrich), 3-mercaptopropionic acid (Z99%, Aldrich), 2-2-dimethoxy-2phenylacetophenone (DMPA, (Z99%, Aldrich), tert-butyl isocyanide (98%, Aldrich), O-methyl-O 0 -succinylpolyethylene glycol 2 0 000 (Aldrich), triethylamine (Z99%, Aldrich), 3-buten-1-ol (Z98%, Aldrich), dimethyl sulfide (Z99%, Aldrich), N,N 0dicyclohexylcarbodiimide (99%, Aldrich), N-hydroxysuccinimide (Z97%, Aldrich), 1,5,7-triazabicyclo[4.4.0]dec-5-ene (Aldrich),4-(Dimethylamino)pyridine (Z99%, Aldrich), silica gel 60 (0.035-0.070, Aldrich), chloroform-d (CDCl 3 , 99.96% D, 0.03% v/v TMS, Aldrich), deuterium oxide (99.9% D, Aldrich), Triton X-100 (Aldrich), Sephadex s LH20, phosphate buffered saline (PBS) (Dulbecco's, Aldrich). TrypLEt Express Enzyme (1X) no phenol red (GibcoTM), Hoechst 33342, CellMaskt Green plasma membrane stain was purchased from Thermo Fisher Scientific. Cyanine5 (Cy5) ammine fluorescent dye was purchased from Lumiprobe. CellTiter-Fluort Cell Viability Assay (Promega, Madison WI), L-glutamine (Aldrich), RPMI-1640 media and fetal bovine serum (FBS) were obtained from Life Technologies (Carlsbad, CA, USA). All solvents used were of technical grade.
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5

Synthesis of Nonafluorinated Dioxolane Compound

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Example 7

Synthesis of 4-(2,2,3,3,4,4,5,5,5-nonafluoropentyl)-2-(2,2,2-trifluoroethoxy)-1,3-dioxolane. 1H, 1H, 2H, 3H, 3H-perfluoroheptane-1,2-diol (25 g, 85 mmol, 1 eq., SynQuest Laboratories, Inc. (Alachua, Fla.)) was dissolved in 250 mL of cyclohexanes (Aldrich). Trimethylorthoformate (18 g, 170 mmol, 2.0 eq., Aldrich) was added to the flask along with a catalytic amount of Amberlyst 15 (H form, Aldrich) and a Teflon coated magnetic stirbar. The flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 65° C. After 4 hours, the reaction was deemed complete by the lack of further distillation of trifluoroethanol azeotrope and the flask cooled to room temperature. The Amberlyst resin was removed by filtration and the filtrate concentrated at reduced pressure on a rotary evaporator. The residual mixture was purified by fractional distillation under reduced pressure (b.p.=105-110° C. at 10 mmHg), providing the title compound in 39% isolated yield. The product was verified by characteristic peaks in the 1H NMR and by molecular ion in ESI/TOF mass spectroscopy (M+1, 405.0 m/z).

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6

Synthesis of Fluorinated Dioxolane Compound

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Example 9

Synthesis of 2-methoxy-4,5-bis(2,2,3,3,4,4,5,5,5-nonafluoropentyl)-1,3-dioxolane. 1,1,1,2,2,3,3,4,4,9,9,10,10,11,11,12,12,12-Octadecafluoro-6,7-dodecanediol was prepared by the method described by Laurent, P. et al (Journal of Fluorine Chemistry, 62(2-3), 161-71; 1993). The diol (12 g, 22.8 mmol) was dissolved in 120 mL of cyclohexanes (Aldrich). Trimethylorthoformate (4.8 g, 45.6 mmol, 2.0 eq., Aldrich) was added to the flask along with a catalytic amount of Amberlyst 15 (H form, Aldrich) and a Teflon coated magnetic stirbar. The flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 45° C. After 4 hours, the reaction was deemed complete by the lack of further distillation of methanol azeotrope and the flask cooled to room temperature. The Amberlyst resin was removed by filtration and the filtrate concentrated at reduced pressure on a rotary evaporator. The residual mixture was purified by fractional distillation under reduced pressure (b.p.=162-173° C. at 10 mmHg), providing the title compound in 52% isolated yield. The product was verified by characteristic peaks in the 1H NMR and by molecular ion in ESI/TOF mass spectroscopy (M+1, 569.1 m/z).

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7

Synthesis of Fluorinated Dioxolane Compound

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Example 3

Synthesis of 2-methoxy-4-(3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyl)-1,3-dioxolane. 5,5,6,6,7,7,8,8,9,9,10,10,10-tridecafluorodecane-1,2-diol (25 g, 61 mmol, 1 eq., Shanghai Chemhere Co., Ltd.) was dissolved in 300 mL of a 90/10 (vol/vol) mixture of cyclohexanes/trifluorotoluene (Aldrich) at a concentration of 2 M. Trimethylorthoformate (9 g, 85 mmol, 1.4 eq., Aldrich) was added to the flask along with a catalytic amount of Amberlyst 15 (H form, Aldrich) and a Teflon coated magnetic stirbar. The flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 45° C. After 4 hours, the reaction was deemed complete by the lack of further distillation of methanol azeotrope and the flask was cooled to room temperature. The Amberlyst resin was removed by filtration and the filtrate concentrated at reduced pressure on a rotary evaporator. The residual was purified by fractional distillation under reduced pressure (b.p.=120-130° C. at 10 mmHg), providing the title compound in 64% isolated yield. The product was verified by characteristic peaks in the 1H NMR and by molecular ion in ESI/TOF mass spectroscopy (M+1, 451.1 m/z).

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8

Synthesis of 2-methoxy-4-((phenyldisulfanyl)methyl)-1,3-dioxolane

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Example 19

Synthesis of 2-methoxy-4-((phenyldisulfanyl)methyl)-1,3-dioxolane. 3-(phenyldisulfanyl)propane-1,2-diol was prepared by the method described by Hunter R. et al (Journal of Organic Chemistry, 71, 8268-8271; 2006). The diol (102 mg, 0.47 mmol) was dissolved in cyclohexane (Aldrich) at a concentration of 0.1M in a round bottom flask containing a Teflon coated magnetic stirbar. Trimethyl orthoformate (1.5 eq, Aldrich) and p-toluenesulfonic acid (Aldrich) were added to the round bottom flask and the flask was fitted with a Dean-Stark distillation head. The reaction was slowly heated to reflux and the methanol was removed by azeotropic distillation at a boiling point of 45° C. After 3 hours, the reaction was complete and the flask cooled to room temperature, followed by concentration at reduced pressure on a rotary evaporator. The product was purified by silica gel column chromatography, eluting with a gradient of hexane:ethyl acetate (starting from hexane). The title compound was isolated in 68% yield. The product was verified by characteristic peaks in the 1H and 13C NMR and by molecular ion in positive mode ESI/TOF mass spectroscopy ([M-OMe]+, 227.0 m/z).

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9

Synthesis of Colloidal Nanocrystals

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Hafnium(IV) chloride (98%), zirconium(IV)
chloride (≥99.5%), oleic acid (90%), oleylamine (70%), trimethyl
orthoformate (99%), trifluoroacetic acid (99%), acetic acid (≥99%),
dibenzyl ether (98%), and benzyl chloride (99%) are obtained from
Sigma-Aldrich. Benzyl alcohol was purchased either anydrous (99.8%)
or as ReagentPlus (≥99%) from Sigma-Aldrich; the latter was
then vacuum distilled and stored over sieves. Tetrahydrofuran (extra
dry, 99.5%) was purchased from Acros Organics. Hydrochloric acid (≥37%)
was purchased from Chemlab. Tri-n-octylphosphine
oxide (99%) was puchased from Strem chemicals and recrystallized according
to Owen et al.81 (link) Solvents used for synthesis
were purchased from Chemlab or Sigma-Aldrich. Deuterated solvents
(CDCl3 and C6D6) were purchased from
Sigma-Aldrich or Eurisotop.
All manipulations were performed
in air, unless otherwise indicated. All chemicals are used as received
unless otherwise mentioned. When required, organic solvents are dried
according to the procedure described by Williams et al.82 (link) making use of 20% m/v freshly activated 3 Å
sieves for a minimum of 120 h.
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10

Synthesis of Heterocyclic Compounds

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All experiments were carried out in an atmosphere of dry argon, and flasks were flame dried. Solvents were dried by usual methods (diphenyl ether, diethyl ether, and THF over benzophenone ketyl, CHCl3, and CH2Cl2 over P4O10, hexane over sodium-potassium alloy) and distilled. Chromatographic purification was carried out on silica gel 60 (0.15–0.3 mm, Macherey-Nagel GmbH & Co. KG, Düren, Germany). Sodium hydride (dry, 95%), potassium tert-butoxide, trimethyl orthoformate, 2-iso-propylaniline, 2-(tert-butyl)aniline, 2-nitroaniline, phosphoryl chloride, 9H-carbazole, Meldrum’s acid, acrolein, and crotonaldehyde were purchased from Sigma-Aldrich (Poznań, Poland), and were used without further purification.
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