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Taq buffer

Manufactured by Solgent

Taq buffer is a solution that provides a stable and optimal environment for the Taq DNA polymerase enzyme to function during DNA amplification processes, such as PCR (Polymerase Chain Reaction). The buffer contains a balanced combination of salts, cofactors, and pH regulators that support the enzymatic activity and fidelity of Taq polymerase.

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2 protocols using taq buffer

1

Cloning and Sequencing of 3' UTR Regions

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The 3′ untranslated regions (UTRs) of the gene sequences targeted by the miRNAs were investigated by Microrna (http://www.microrna.org/microrna/home.do, accessed on 5 June 2021) and used to design oligonucleotides for the luciferase assay. The region of mRNA 3′ UTR was amplified using PCR. The solution of fragment synthesis was contained 10 × Taq buffer (Solgent Co.), 10 mM dNTP mix (Solgent Co.), and h-Taq (Solgent Co.). The synthesis conditions were an initial denaturation at 95 °C for 5 min, 35 cycles of denaturation at 95 °C for 5 s, annealing at 60 °C for 30 s, extension at 72 °C for 1 min, and a pause at 4 °C. The PCR products were purified using a PCR purification kit (Bioneer, Daejeon, Korea). The PCR products were inserted into multiple cloning sites of a pmirGLO vector (Promega, Madison, WI, USA). The linearized pmirGLO vector was mixed with the PCR products and ligase using a ligation protocol. The complete pmirGLO vector was transformed into competent cells and spread onto an ampicillin-containing LB plate. After 24 h of incubation, colonies were selected and cultured in an ampicillin-containing LB broth. Plasmid DNA was extracted using a Plasmid mini extraction kit (Bioneer). The fidelity of the plasmid DNA sequence was confirmed by DNA sequencing.
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2

Cloning of miRNA target sequences

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The 3’ untranslated regions (UTRs) of the gene sequences targeted by miRNAs were identified by Miranda (http://www.microrna.org/microrna/home.do) [24 (link)] and used to design oligonucleotides for the luciferase assay. The mRNA-3’ UTR region fragments were amplified using PCR. The fragment synthesis solution contained 10× Taq buffer (Solgent Co.), 10 mM dNTP mix (Solgent Co.), and h-taq (Solgent Co.). The synthesis conditions were an initial denaturation at 95°C for 5 minutes, 35 cycles of denaturation at 95°C for 5 seconds, annealing at 60°C for 30 seconds, extension at 72°C for 1 minute, and a pause at 4°C. Then, the PCR product was purified using a PCR purification kit (Bioneer, Daejeon, Korea). The product was inserted into multiple cloning sites of a pmirGLO vector (Promega, Madison, WI, USA) that was linearized by a restriction enzyme. The linearized pmirGLO vector was mixed with the PCR product and ligase using a ligation protocol. The complete pmirGLO vector was transformed into competent cells and spread onto an ampicillin-containing agar plate. After 24 hours of incubation, colonies were selected and cultured in ampicillin-containing broth. Plasmid DNA was extracted using a plasmid mini extraction kit (Bioneer). The fidelity of the plasmid DNA sequence was confirmed by DNA sequencing.
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