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Gentra puregene blood kit

Manufactured by Qiagen
Sourced in Germany, United States, Spain, Netherlands, Canada, China, United Kingdom

The Gentra Puregene Blood Kit is a laboratory equipment product designed for the extraction and purification of genomic DNA from whole blood samples. It provides a reliable and efficient method for isolating DNA for various downstream applications, such as PCR, sequencing, and genotyping.

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569 protocols using gentra puregene blood kit

1

Whole Blood DNA Purification and Sanger Sequencing

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3 ml of an EDTA‐preserved whole blood sample of de novo probands’ healthy parents was used for genomic DNA purification, using the Gentra Puregene Blood Kit (Quiagen, Germany) in accordance with the manufacturer's protocol, and stored at −80°C.
In order to affirm the absence of an OI‐causative pathogenic variant in healthy parents, Sanger sequencing of an exon carrying a subject's pathogenic variant was performed. PCR amplification, Sanger sequencing, and analysis of the sequencing products were each performed as described in previous studies (Ho Duy et al., 2016; Zhytnik et al., 2017).
Sequence products were also aligned to the GenBank human reference genome sequences of COL1A1 (gDNA NG_007400.1, complementary (cDNA) NM_000088.3) and COL1A2 (gDNA NG_007405.1, cDNA NM_000089.3). The datasets used and analyzed during the study are available from the corresponding author upon reasonable request.
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2

Genomic DNA Extraction and Sanger Sequencing of TDO2

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Genomic DNA was extracted from EDTA anti-coagulant peripheral blood using an Autopure LS System and Gentra Puregene Blood Kit reagents (Quiagen, Toronto, Canada). Bi-directional Sanger sequencing of TDO2 was undertaken with primers designed by NCBI Primer-BLAST software (sequences are available upon request), the HotStar Plus amplification system (Qiagen, Toronto, ON), and resolution using a 3130xL Genetic Analyzer (Life Technologies, Burlington, ON). Sequence subtraction was performed using Mutation Surveyor V4.05 software (SoftGenetics, State College, PA) and variants analyzed using Alamut Software (Interactive Biosoftware, San Diego, CA).
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3

Horse DNA Extraction Protocol

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DNA was collected and purified from all horses (Gentra Puregene blood kit, Quiagen, Valencia, CA).
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4

Genomic DNA Extraction from Blood

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Peripheral blood samples were collected in EDTA-containing tubes (5 ml). Genomic DNA was isolated using the Gentra Puregene Blood kit (QUIAGEN Inc.) following the manufacturer’s instructions. Peripheral blood samples were also collected in 1% sodium heparin tubes in eight DGS/VCFS parents-of origin and ten control individuals (10 ml) (Supplementary Table S4 and Fig. 5).
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5

Genotyping of DENND1B Gene from Blood

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DNA extraction was performed from blood samples according to the protocol of the Gentra ® Puregene ® Blood Kit (Quiagen). All samples to be genotyped were standardized at a concentration of 5 ng/μL and stored at -30 °C until use.
The genotyping was performed using standardized commercial panel 2.5 HumanOmni Beadchip and currently available from Illumina (www.illumina.com). The DENND1B genetic information were extracted from 197473878 to 197744623 position (NC_000001.10) at the chromosome 1. Most of these SNPs were selected from the 3.1 million genotyped SNPs in the HapMap International Project (http://www. hapmap.org/), which represents the largest international initiative for mapping genomic variability and the pattern of imbalance in the human genome (The International HapMap Consortium, 2007) .
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6

Genomic DNA Isolation from Blood and Hair

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Genomic DNA was isolated from peripheral blood or hair follicles using QIAGEN Gentra PureGene Blood kit (Qiagen) according to manufacturer's protocol. The DNA was cleaned with DNeasy Blood and Tissue kit (Qiagen) and quality checked by gel electrophoresis and by Nanodrop spectrophotometry (Thermo Scientific).
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7

Genetic Investigation of Greek-Cypriot Families

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Through this study, we investigated two Greek-Cypriot families. Family 926 was a three-generation family with one affected and six unaffected family members. Family 915 was a two-generation consanguineous family with two affected and three unaffected family members (Figure 1A).
All affected individuals were clinically evaluated in detail by the participating clinicians (CPY, EZ-P, SP, and GT), family history was obtained, and MRI brain scan and magnetic resonance spectroscopy (MRS) were performed. In addition, for family 926, cardiology and ophthalmological examination were performed. Blood samples were collected from consenting individuals, and genomic DNA was isolated using the Qiagen Gentra Puregene Blood Kit (Qiagen, Dusseldorf, Germany). Ethical approval was granted by the Cyprus National Bioethics Committee (EBKK/EΠ/2013/18, May 14, 2015).
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8

Genomic DNA Extraction from Cells and FFPE

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Genomic DNA from fresh cells was extracted with the QIAGEN Gentra Puregene Blood kit (QIAGEN INC, Hilden, Germany. Cat# 158023) according to manufacturer's instructions. DNA concentrations were verified using the Qubit 1x dsDNA High Sensitivity assay (Thermo Fisher Scientific Inc, Carlsbad, CA, USA. Cat# Q32851). Genomic DNA extraction from FFPE tissue samples was performed using the QIAamp DNA FFPE Tissue Kit (QIAGEN INC, Hilden, Germany. Cat# 56404) according to manufacturer instructions, with one deviation whereby samples received two washes of AW1 and AW2 buffers, in sequence, to ensure the cleanest possible product. From FFPE tissues, DNA extractions were performed on 15 μm curl sections, and unstained slides of 4 μm sections, cut from the FFPE block. For cell pellets and tissue for patient 1, two 15 μm curls were cut for DNA extraction. For patients 2-9, tissue was removed from three unstained slides each containing a 4 μm section of tissue. These FFPE patient samples were deparaffinized by using xylene and ethanol washes, and DNA was extracted using the QIAamp DNA FFPE Tissue Kit. The final eluate volume was 20-30μL to maximize eluted DNA concentration.
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9

Genetic Analysis of Thyroid Nodules

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Fresh tissue thyroid samples (~0.5 cm) were collected in the operating room from the largest nodule and immediately cryopreserved until DNA extraction. The remaining thyroid gland was formalin-fixed and paraffin-embedded and submitted to a histological evaluation by HCFMUSP Pathology Service. DNA was extracted from fresh specimens using QIAGEN AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) followed by purification according to the manufacturer's instructions.
DICER1 hotspot regions corresponding to RNAse IIIa and IIIb domains (including exons 19 to 26) were amplified by PCR and directly sequenced in an ABI Prism Genetic Analyzer 3130xl automatic DNA sequencer (Applied Biosystems, Foster City, USA) as previously described (7 (link)) and compared to the genomic sequence provided by Ensembl Genome Browser (ENSG00000100697). DICER1 variants were searched in ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) to evaluate their significance to disease.
DNA was extracted from peripheral blood using QIAGEN Gentra Puregene Blood Kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions and DICER1 hotspot regions were amplified as described above to confirm germline mutation.
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10

Genomic DNA Extraction for Colorectal Cancer

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Genomic DNA was extracted from primary CRC tissues and matched lymphocyte samples using QIAamp DNA Mini Kit (Qiagen, Germany) and Gentra Puregene Blood Kit (Gentra Systems, Minneapolis, Minnesota, USA), respectively. All samples were collected from patients diagnosed with primary CRC without chemotherapy prior to surgery. After surgery, all stage I patients did not receive further chemotherapy whereas stage III and some stage II patients were treated with the 5-fluorouracil, leucovorin, and oxaliplatin (FOLFOX) regimen. Stage IV patients received either FOLFOX or 5-fluorouracil, folinic acid, irinotecan (FOLFIRI) regimen with irinotecan plus cetuximab as second-line treatment.
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