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32 protocols using qcolor5

1

Histological Evaluation of PDT-Treated Tumors

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One day after the second dose of PDT, mice were sacrificed and samples of tumours with their adjacent SOTs and normal skins were excised, extended, sliced, fixed in 10% buffered formalin, embedded in paraffin, sectioned, stained with hematoxylin and eosin, and examined by light microscopy under 4 ×, 10 × and 40 × magnifications (BX51 Olympus microscope, Japan), and photographs were documented with a digital camera (Olympus Q-color 5, Japan). The presence of tumour tissue, necrosis and other signals of tissue damage was evaluated. Epidermal and dermal damage, vascularity changes and the presence of lymphocytic infiltration were also investigated.
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2

Linear Dichroism Analysis of Proteoglycan Orientation

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Linear dichroism measurements (n = 4) were obtained from toluidine blue-stained sections. Linear dichroism measurements have shown that GAG chains present in collagen fiber PGs are linearly distributed and predominantly parallel to the longest fiber axis [3 (link),39 (link),40 (link)]. In this case, linear dichroism is an extrinsic phenomenon, resulting from the arrangement of toluidine blue molecules that are electrostatically bound to the anionic link sites of the oriented substrate. The dichroic ratio (DR=dוו/d) was determined by the toluidine blue absorbance in the parallel (dוו) and perpendicular (d) positions of the tendon’s longest axis, with regard to the polarized light plane (PLP) [39 (link),40 (link)]. Linear dichroism was measured using an Olympus BX53 polarizing microscope (Objective: Olympus UPlanFL N 40×; Camera: Olympus Q-color 5; Polarizer: Olympus U-POT) and an image analyzer (Life Science Imaging Software, Version 510_UMA_-cellSens16_Han_en_00). The number of measurements (~100) of GA was represented as the median and they were chosen at random in 16 sections from four tendons of each group.
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3

Indomethacin-Induced Small Intestinal Lesion Model

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To induce small intestinal lesions, non-fasted animals were given a single subcutaneous injection of indomethacin at a dose of 15 mg/kg dissolved in 100% ethanol at 100 ul. Animals were then randomly assigned to receive either intraperitoneal injection of ZINC40099027 at 900 ug/kg or DMSO vehicle control every six hours for three days after allowing 24 hours for ulcer induction. At day 4, mice were anesthetized with isoflurane, blood was drawn by cardiac puncture for assay of serum levels of creatinine, ALT, and ZINC40099027, and animals were sacrificed by cervical dislocation before removing the small bowel for measurement of ulcers. In addition, small bowel ulcer tissue, liver, and kidney were saved in some animals for histological examination. The full length of the small intestine was excised at day 4 at sacrifice. The small intestine was gently washed with phosphate buffered saline, fixed in neutral-buffered 10% formalin for 5 minutes, and then opened along the anti-mesenteric attachment for imaging. Mucosal ulcers were imaged with an OLYMPUS Q Color 5 digital camera. Ulcer area was measured with Image J software and we summed the total area of all ulcers within each animal’s small bowel to achieve a final total ulcer area. Area measurements were made by an observer blinded to animal group assignments.
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4

Quantifying ZNF217 Expression in PCOS Ovaries

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ZNF217 immunoperoxidase staining was performed on sections of paraffin-embedded ovaries from normal cycling and PCOS women, using conditions we have previously described [16 (link)]. Anti-ZNF217 antibody (Atlas Antibodies catalog No. HPA051857, RRID:AB_2681641, https://scicrunch.org/resources-legacy/Any/search?q=AB_2681641&l=AB_2681641), which binds to both ZNF217.V1 and ZNF217.V2), and the ZNF217 recombinant protein (APREST85710) were obtained from Sigma-Aldrich. Image analysis was performed using a digital camera (Olympus QColor5), attached to an Olympus BH-2 microscope. The staining area was quantified using the CellSens imaging software (Olympus). To quantify the staining area, multiple regions of interest (ROIs) were selected in the theca cell layer, and staining area was measured within the ROIs. Each image within the same experiment contained the same number of identical ROIs. Data were reported using percentage ROI area stained.
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5

Acridine Orange Staining of Differentiated Cells

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Differentiation protocol was performed in a 16 well chamber glass (17599, LabTek, NUNC). At day 18, acridine orange (318337, Sigma) was added to the culture medium at a final concentration of 10 µg/ml, for 45min, in the dark, at RT, after this, cells were carefully washed and maintained in PBS for immediate visualization. The cells were viewed and photographed with an inverted phase-contrast Olympus CKX41 microscope equipped with 510/540 nm excitation filter using Olympus camera Q-Color 5.
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6

Microscopic Staining Quantification

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Slides were analyzed with an Olympus BH-2 microscope (Olympus, Center Valley, PA) attached to a digital camera (Olympus QColor5) using image analysis software (cellSens, Olympus). Relative differences in staining were identified by highlighting specific stained areas with yellow overlay using the “Measuring Images” tool. Data were quantified and reported as area stained (μm2).
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7

Wound Closure Assay for Cell Migration

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A wound assay was employed to study the effect of CM-siStat3 of tumor cell on its cell migration. Wounds 400 μm wide were made in confluent monolayers. Cells were treated with CM-siControl or CM-siStat3 obtained from the corresponding cell line and allowed to migrate into the cell‐free area. At 18 h, cells were viewed and photographed with an inverted Olympus CKX41 microscope with 10×/0.25 objective using Olympus camera Q-Color 5. The cell-free wound area was quantified using ImageJ software (National Institutes of Health).
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8

Multimodal Microscopy and Imaging Analysis

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An Olympus IX-71 inverted fluorescence microscope equipped with a true-color charge-coupled device (QColor5, Olympus), a LSM 510 Meta confocal microscpe (Zeiss, Dublin, CA) and a hyper-spectral imaging camera (Nuance, 420–720 nm spectral range, CRI, now Advanced Molecular Vision) were used for cell imaging. Low-magnification images were obtained with a 20X objective (NA 0.75, Olympus) and high-magnification with 40X and 100X oil-immersion objectives (NA 1.40, Olympus). Wide UV filter cube (330–385 nm band-pass excitation, 420 nm long-pass emission, Olympus) was used for imaging of all QD probes. All images were acquired with cells attached to the coverslip bottom of the well and immersed in PBS without anti-fading reagents. For quantitative comparisons, the same exposure time and gain were applied during imaging. Nuance image analysis software and ImageJ were used to identify regions of interest that included stained cells and excluded ‘blank’ cell-free areas. Average fluorescence intensity throughout all regions of interest within a single image was recorded. Identical analysis was performed on 4 images (containing ~40 cells per field of view) taken from different areas of the sample to obtain an overall average staining intensity and assess signal variation.
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9

Melanoma ICAM-1 Expression Evaluation

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162 human melanoma tissue samples and 178 normal human tissue samples from 20 different organs were stained and evaluated for ICAM-1 expression level and tumor specificity. Immunohistochemical staining was performed on paraffin-embedded human melanoma tissue microarrays (ME2080b, T382a and T386) and normal tissue microarrays (BN00011 and BN1002a). The individual tissue cores in the microarrays were scored by an independent pathologist, with no knowledge of sample identity, for no staining (0), weak staining (1+), moderate staining (2+), or strong staining (3+). Photomicrographs were taken on an Olympus BX41 microscope by using an Olympus Q-Color5 digital camera (Olympus America Inc.).
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10

Salivary Gland Chromosome Mapping

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Salivary glands dissected from one or two 4th instar larvae were used for one chromosome preparation. Isolated salivary glands were bathed in a drop of 50% propionic acid for 5 min and squashed as previously described (Sharakhova et al. 2015 ). The quality of the preparation was assessed with an Olympus CX41 phase-contrast microscope (Olympus America Inc., Melville, NY). High-quality chromosome preparations were then flash frozen in liquid nitrogen and immediately placed in cold 50% ethanol. After that, preparations were dehydrated in an ethanol series (50, 70, 90, and 100%) and air-dried. Unstained chromosomes were observed using an Olympus BX41 phase-contrast microscope with attached CCD camera Qcolor5 (Olympus America Inc., Melville, NY). For the chromosome map development, about 200 images of well-polytenized and well-spread chromosomes were obtained. Images were combined, straightened, shaped, and cropped using AdobePhotoshop CS2 software. The chromosome nomenclature was adopted from the previously published cytogenetic maps of An. albimanus (Keppler et al. 1973 ; Cornel and Collins 2000 (link)).
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