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74 protocols using vx 809

1

Detailed Thymosin α1 Peptide Preparation

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Gaslini Laboratory: Tα-1 peptides were purchased from CRIBI (CRIBI Biotechnology Center, Peptide Facility, Università di Padova, Italy) and from Abcam (cat. #ab42247). Thymosin α1 peptides were dissolved at 2 mg/ml in either DMSO or ddH2O, VX-809 (SelleckChem, S1565) was solubilised in DMSO (10 mM), cysteamine (Sigma, M9768) was freshly solubilised in aqueous solution at the desired final concentration.
McGill Laboratory: Thymosin α1 (abcam, ab42247) was reconstituted in 0.1% acetic acid, VX-809 (Selleck, S1565) was solubilised in DMSO, cysteamine (Sigma, M9768) was freshly solubilised in aqueous solution, and epigallocatechin gallate (EGCG, Sigma, E4143) was solubilised in ethanol.
UCSF Laboratory: VX-809, VX-770 and CFTRinh-172 were purchased from Selleck Chemicals (Boston, MA). Human Thymosin alpha-1 peptide (ab42247) were purchased from Abcam (Cambridge, MA).
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2

Evaluating CFTR Modulators in HEK293 Cells

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HEK293 cells were maintained in Dulbecco's modified Eagle's medium, supplemented with 2 mm l-glutamine, 100 units/ml penicillin and streptomycin, and 10% fetal bovine serum (all from Life Technologies, Inc.). Cells were seeded in poly-d-lysine–coated, black-walled 96-well plates (Costar, Fisher Scientific) and transiently transfected with the pIRES2-mCherry-YFPCFTR plasmid using Lipofectamine 2000 (Life Technologies), following the manufacturer's instructions. After transfection, cell plates were returned to the 37 °C incubator for 24 h. Prior to imaging, plates were incubated for another 24 h, at 37 or 28 °C, in 100 μl of Dulbecco's modified Eagle's medium including DMSO (vehicle), 10 μm VX-809, or 10 μm VX-770 plus 10 μm VX-809 (Selleck Chemicals), as indicated. The assay is currently run using 96-well plates, but small changes could make it compatible with a 384-well plate format.
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3

Quantifying CFTR function in airway cells

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Differentiated hNECs were incubated (basal side) with 3 μM VX-809 (LUM, Selleckchem S1565), 5 μM VX-661 (TEZ, Selleckchem S7059) or vehicle control (0.01% DMSO) for 48 h prior to experiments. For ELX/TEZ/IVA treatment, 3 μM VX-445 (ELX, Selleckchem S8851) and 18 μM VX-661 was used. Following 48 h of pre-treatment, differentiated hNECs were mounted in circulating Ussing chambers (see Section “Quantification of CFTR-mediated ion transport in differentiated airway cell models”). 10 μM VX-770 (IVA, Selleckchem S1144) or 0.01% DMSO was added acutely to the apical compartment of the Ussing chamber during CFTR-mediated ion transport assays.
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4

Evaluating CFTR Rescue in Primary Nasal Epithelial Cells

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Primary human nasal epithelial cells (pHNEs) were obtained from nasal brushing as before [37 (link)]. After expansion, cells were seeded on porous membranes and cultured under air–liquid interface (ALI) conditions for 21 days following protocols by Jeffrey Beekman’s lab (Utrecht, The Netherlands, submitted to Cell Rep Med). Differentiated monolayers of pHNEs were incubated with 3 µM VX809, 5 µM VX661 (Selleckchem, TX, USA), or DMSO alone for 48 h prior to measurements in an Ussing Chamber. The pHNE monolayers were mounted on micro-Ussing chambers and analyzed under open-circuit conditions, as described previously [16 (link)]. CFTR was stimulated by the presence of forskolin (2 µM) + IBMX (100 µM), and specificity was evaluated after using CFTR inhibitor 172 (25 µM). Experiments were performed in the presence of amiloride (20 µM) to inhibit the Epithelial Sodium (Na+) Channel (ENaC) and thus avoid interference of ENaC-mediated currents. In pHNEs, the maximum CFTR activation corresponds to the sum of IBMX/Fsk and IBMX/Fsk+VX-770 responses [16 (link)]. CFTR rescue by CFTR modulators in pHNEs was assessed by comparison of the maximum activation of CFTR between control pHNE (DMSO) and treated pHNE (VX809 or VX661). The individuals were considered responders when this difference was statistically different (p-value < 0.05). Each experiment was performed at least three times.
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5

Organoid Size Regulation by Secretagogues

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Images of CLC organoids were taken using 5X magnification before and following the addition of secretin (100nM, Sigma Aldrich), somatostatin (100nM, Sigma Aldrich), octrotide (100nM, Sigma Aldrich) or embryo transfer water serving as a negative control, at 0.5 - 2 minute intervals until organoid size stabilized. To explore the impact of octreotide on the effect of secretin, cells were pre-incubated for 30 minutes with octreotide. 100nM of secretin (Sigma Aldrich) was subsequently added to the medium and the experiment was carried out as described above. To assess the effect of VX809 on organoid size images were taken before and 6 hours following the addition of VX809 (30mM, Selleck) or embryo transfer water, serving as a negative control. 3 random diameters were measured for 8 random organoids pre and post treatment. Graph measurements represent percentage differences in mean organoid diameter. Error bars represent SD. Statistical significance was calculated using one-way ANOVA with Dunnett correction for multiple comparisons. The videos available as online supplementary data were made by taking images pre and post treatment at 2 minute intervals, until organoid size stabilized.
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6

Phe508del CFTR Cl− Secretion Modulation

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CF-HBE and CFBE cells were treated with VX-809 (3 μM, Selleckchem, Houston, TX) for 48 h to increase Phe508del CFTR Cl- secretion. VX-809 is a key component of Orkambi, an FDA drug approved for use in CF patients to stimulate Phe508del CFTR Cl- secretion by CF-HBE cells. To provide biological validation for our proteomics analysis, in one set of experiments, the same number of OMVs isolated from control or Tobramycin treated P. aeruginosa were added to the apical side of CF-HBE or CFBE cells for 1.5 h before measurements of Phe508del CFTR Cl- secretion. OMVs were quantified using FM 4–64 fluorescent dye (Invitrogen) as described previously [25 (link)]. In a second validation experiment either P. aeruginosa (PA14-wt) or PA14, in which the aprA gene was deleted (PA14-ΔaprA), was added to the apical side of CF-HBE cells at a multiplicity of infection (MOI) of 30:1 for 6 hours. Phe508del CFTR Cl- secretion was measured as described in detail previously [9 (link)].
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7

Cytotoxicity of CFTR Modulators

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To determine the cytotoxicity of commercial compounds that modulate CFTR protein activity, cells were incubated with different concentrations (1 to 50 μM) of ivacaftor (VX-770, Merck) or lumacaftor (VX-809; Selleck Chemicals) and cell viability was determined by the MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazol bromide] reduction assay (88 (link)).
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8

CFTR Trafficking Assay in CFBE Cells

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The assay was performed as previously described (Botelho et al, 2015 (link)) CFBE cells expressing the inducible mCherry‐Flag‐CFTR reporter (WT‐ or F508del‐CFTR variants) were grown to confluence and split to 50% confluency. Twenty‐four hours later, the cells were trypsinized to antibiotic‐free medium and seeded in siRNA coated 384‐well plates (1,000 cells/well) using a Multidrop™ Combi peristaltic dispenser (Thermo Scientific 5840300). CFTR expression was induced for 48 h (24 h after seeding) by supplementing the medium with 1 μg/ml of doxycycline (Sigma 9891). At this point, VX‐809 (3 µM) or VX‐661 (5 µM) (Selleckchem (S7059)) were added to selected wells containing Neg1 siRNA as a positive control for F508del‐CFTR traffic rescue. Extracellular Flag tags were immunostained in non‐permeabilized cells 72 h after seeding. The primary anti‐Flag antibody (Sigma F‐1804, 1:500) was incubated 1 h at 4°C, the cells were fixed with PFA 3% for 20 min at 4°C, an anti‐mouse IgG antibody conjugated with Alexa 647 (Invitrogen A‐31571. 1:500) was incubated 1 h at room temperature and Hoechst 33342 (200 ng/ml, Sigma B2261) was incubated 1 h at room temperature. Four independent biological replicates were performed.
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9

Evaluation of CFTR Correctors in Cystic Fibrosis

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The 3-[6-[[[1-(2,2-difluoro-1,3-benzodioxol-5-yl)cyclopropyl]carbonyl]amino]-3-methyl-2-pyridinyl]-benzoic acid (Lumacaftor, VX809), 1-(2,2-difluoro-1,3-benzodioxol-5-yl)-N-[1-[(2R)-2,3-dihydroxypropyl]-6-fluoro-2-(2-hydroxy-1,1-dimethylethyl)-1H-indol-5-yl]-cyclopropanecarboxamide (Tezacaftor, VX661), N-[2-(5-chloro-2-methoxyphenylamino)-2 0-yl]benzamide (corr4a), 4-(cyclohexyloxy)-2-{1-[4-(4-metho-xybenzenesulfonyl)piperazin-1-yl]ethyl}quinazoline (VX325) correctors were purchased from Selleck Chemicals (Munich, Germany). If not explicitly indicated in the text, all other chemicals and culture media components were provided by Sigma-Aldrich (Milan, Italy).
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10

Screening for CFTR Modulators

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VX-809, VX-770, GLPG1837 and CFTRinh-172 were purchased from Selleck Chemicals (Boston, MA). VX-445 and PTI-428 were purchased from MedChemExpress (Monmouth Junction, NJ). Potentiators P2, P3 and P5 are contained in an in-house repository (19 (link)). For screening, a collection of ~50,000 compounds containing diverse drug-like synthetic small molecules (ChemDiv Inc., San Diego, CA) and an in-house repository of mutant CFTR modulators was tested. Other chemicals were purchased from MilliporeSigma (Burlington, MA).
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