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3 protocols using alexa fluor 488 conjugated donkey anti sheep igg

1

Immunofluorescence Assay for Rab27a

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Cells plated on gelatin-coated glass slides (Nunc Lab-Tek II Chamber Slide System) were allowed to attach overnight. Cells were fixed for 20 minutes in 4% Paraformaldehyde (PFA) (Electron Microscopy Sciences, Hatfield, PA, USA), then incubated in blocking solution consisting of 2% normal donkey serum, 1% BSA, 0.1% Triton X-100, 0.05% Tween 20, 0.05% sodium azide in 1× PBS (w/o Ca2+/Mg2+), pH 7.2 for 30 minutes, followed by 30-minute blocking in Protein Block, Serum-free (Dako, Carpinteria, CA, USA) + 0.1% Triton X-100. Sheep anti-Rab27a (Thermo Fisher) or an equivalent concentration of sheep IgG (Thermo Fisher) was diluted 1:40 in donkey serum blocking solution for 1 hour at room temperature, followed by Alexa Fluor 488-conjugated donkey anti-sheep IgG (Thermo Fisher). Cells were mounted in ProLong Gold Antifade with 4′,6-diamidino-2-phenylindole (DAPI) (Thermo Fisher) and visualized on an inverted Nikon A1R fluorescent microscope. Identical imaging parameters (objective, light intensity, gain, exposure) were used between slides and samples.
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2

Immunolabeling of Extracellular Matrix Proteins

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The following lectins and primary antibodies were used for staining: biotinylated WFA (B-1355, Vector Laboratories; 1:200), mouse anti-PV (clone PARV-19, P3088; Sigma-Aldrich Japan, Tokyo, Japan; 1:1000), mouse anti-aggrecan (Cat-315; MAB1581, MERCK; 1:1000), rabbit anti-aggrecan (AB1031, Millipore, Tokyo, Japan; 1:200), goat anti-tenascin-R (AF3865, R&D Systems, Minneapolis, MN, USA; 1:200), sheep anti-brevican (AF4009, R&D Systems; 1:200), and mouse anti-glutamate decarboxylase (GAD67) (clone 1G10.2, MAB5406; Millipore, Bedford, MA; 1:1000).
The following secondary antibodies were used for visualization: Alexa Fluor 488-conjugated goat anti-mouse immunoglobulin (Ig)G (ab150113; Abcam, Cambridge, MA; 1:1000), FITC-conjugated anti-mouse IgM (sc-2082, Santa Cruz Biotechnology, Santa Cruz, CA, 1:1000), Texas Red-conjugated goat anti-rabbit (TI-1000; Vector Laboratories, Funakoshi Co., Tokyo, Japan), DyLight488-conjugated horse anti-goat IgG (DI-3088; Vector Laboratories; 1:500), Alexa Fluor 488-conjugated donkey anti-sheep IgG (A-11015; Thermo Fisher Scientific, Kanagawa, Japan; 1:1000), and streptavidin-conjugated Alexa Fluor 594 (S11227, Thermo Fisher Scientific; 1:1000).
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3

Antibody Validation for Protein Studies

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These antibodies were purchased: sheep polyclonal anti-PCDH15 (Cat.# AF6279; R&D Systems); mouse monoclonal anti-HA (MMS-101p; Covance) and anti-FLAG (clone M2; Sigma-Aldrich); Alexa Fluor 488-conjugated (Cat.# ab181448; Abcam) and Alexa Fluor 647-conjugated (Cat.# ab150115; Abcam) goat anti-mouse IgG; biotinylated (Cat.# 65-6140; Thermo Fisher) and Alexa Fluor 647-conjugated (Cat.# ab150079; Abcam) goat anti-rabbit IgG; Alexa Fluor 488-conjugated donkey anti-sheep IgG (Cat.#ab150177); and biotinylated donkey anti-rabbit IgG (Cat.# A16027; Thermo Fisher).
The following homemade antibodies were used in this study: rabbit anti-TMC1 serum (against N-terminal 39 aa residues of human TMC1) (Li et al., 2019) (link), anti-GFP serum (against purified GFP), and anti-LHFPL5 serum (against C-terminal 20 aa residues of human LHFPL5; Yu et al., Under Revision). The antibodies were generated by immunizing rabbits housed in the animal care facility at the Hong Kong University of Science and Technology.
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