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3 protocols using recq1

1

RECQ1 Interactome Analysis by Immunoprecipitation

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Immunoprecipitation experiments were performed as previously described (25 (link)). Lysates were prepared from 2.5 × 106 cells using RIPA buffer (0.1% SDS, 0.5% Na-deoxycholate, 1% NP40, 150 mM NaCl, 1 mM EDTA, 50 mM Tris/Cl, pH 8) supplemented with phosphatase, protease inhibitors and benzonase. One milligram of lysate was incubated overnight at 4°C with BcMagTM Magnetic Beads (Bioclone) conjugated with 4 μg of anti-RECQ1 antibody under rotation, according to the manufacturer instructions. After extensive washing in RIPA buffer, proteins were eluted in 2× electrophoresis buffer and subjected to SDS–PAGE and western blotting.
Western blotting were performed using standard methods. Blots were incubated with primary antibodies against RECQ1 (Santa Cruz Biotechnology), SMARCAL1 (Bethyl), MRE11 (Novus Biological), DNA2 (Abcam), EXO1 (Santa Cruz Biotechnology), anti-PAR (Abcam), tubulin (Sigma-Aldrich) and lamin B1 (Abcam). After incubations with horseradish peroxidase-linked secondary antibodies (Jackson Immunosciences), the blots were developed using the chemiluminescence detection kit ECL-Plus (Amersham) according to the manufacturer's instructions. Quantification was performed on scanned images of blots using the Image Lab software, and the values shown on the graphs represent normalization of the protein content evaluated through lamin B1 or tubulin immunoblotting.
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2

Immunoblotting Analysis of DNA Repair Proteins

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Forty-eight hours after siRNA transfection, cells were treated with HQ or BaP for 24 h as indicated. Where applicable, NU7026 (20 µM) and KU55933 (10 µM) were added 2 h before BaP treatment to inhibit DNA-PK and ATM, respectively; 0.1% DMSO was added to untreated cells. Subsequently, cells were washed with cold PBS and lysed in RIPA buffer (50 mM Tris-HCl [ph 8.0], 150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS) containing protease and phosphatase inhibitors (Roche)). Equal amounts of total protein for each sample was used for immunoblotting with antibodies against RECQ1 (1:1000) and WRN (1:500) (Santa Cruz Biotechnology); RPA32, γH2AX, phospho-Chk1 Ser345, phospho-Chk2 Thr68, and GAPDH (all 1:1000, Cell Signaling). Images were captured using GeneGnome XRQ Chemidoc System (Syngene) and signal intensities were quantified using ImageJ.
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3

Cellular Protein Fractionation and Analysis

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Chromatin fractionation was performed using the Subcellular Protein Fractionation Kit for Cultured Cells (Thermo Scientific) according to manufacturer’s protocol. Western blots were done using antibodies against RECQ1 (Santa Cruz Biotechnology), Topoisomerase I (BD Biosciences), and Histone H3 (Abcam).
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