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Dynabeads m 270 beads

Manufactured by Thermo Fisher Scientific

Dynabeads® M-270 are uniform, superparamagnetic beads with a diameter of 2.8 μm. They are designed for use in various biomagnetic separation applications.

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2 protocols using dynabeads m 270 beads

1

Conjugation of Anti-GFP Nanobody to Dynabeads

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Chemical conjugation of the anti-GFP nanobody to epoxyl Dynabeads® M-270 beads (Invitrogen, Thermo Fisher Scientific) was performed as previously described22 (link). Briefly, 10 mg of epoxyl Dynabeads® M-270 beads were conjugated with 100 µg Lag16-2K/R anti-GFP nanobody. Beads were washed for 15 min with 0.1 M sodium phosphate buffer pH 7.4 and for 5 min with 0.1 M sodium phosphate buffer pH 8 rocking. Antibody mix was prepared by adding 100 µg nanobody, 0.1 M sodium phosphate buffer pH 8–200 µl final volume and 1 M ammonium sulfate in 0.1 M sodium sulfate pH 7.4 (added dropwise). Antibody mix was centrifuged at maximum speed on a bench top centrifuge for 5 min before being added to the washed beads. Antibody mix and beads were incubated ~20 h at 30 °C tilted-rotating in a round bottom 2 ml microcentrifuge tube. After incubation conjugated beads were washed with 100 mM glycine pH 2.5, 10 mM Tris-HCl pH 8.8 and 100 mM triethylamine freshly prepared to quench the reaction, wash away unbound nanobody and block unreacted epoxyl groups on the beads. Finally, anti-GFP conjugated beads were washed with PBS for 5 min 4 times, with 0.5% NP40 in PBS one time for 5 min and a second time for 15 min rocking, and with PBS for 5 min before storage at −20 °C in 30% glycerol and 0.02% sodium azide in PBS until further use.
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2

Magnetic Bead Manipulation Setup

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Our custom-made setups are built on top of an inverted microscope (Olympus IX-71/Zeiss Axiovert S100) using 63× oil-immersion objective (Zeiss/Olympus), mounted on a nanofocusing piezo actuator (P-725; Physik Instrumente) and a 1.6× optivar lens. The fluid chamber was illuminated using a collimated cold white LED (Thor Labs). Images were acquired using a CCD Pike F-032b camera (Allied Vision Technologies) operating at 280 Hz or a Zyla 5.5 sCMOS camera (Andor), operating at 1030 Hz. Paramagnetic Dynabeads M-270 beads with a diameter of 2.8 μm (Invitrogen) were exposed to force using a pair of permanent neodymium grade N52 magnets (D33, K&J Magnetics), approaching the fluid cell from the top (Figure 1). The position of the magnets was controlled with a linear voice coil (LFA-2010; Equipment Solutions), which is capable of moving 10 mm with ∼0.7 m/s speed and 150 nm position resolution. For long-term recordings, an xy-stage moving with ∼100 nm resolution (M-686, Physik Instrumente) was incorporated in order to address identical bead coordinates over separate days. The data acquisition and control of the voice coil and piezo actuator were done using a multifunction DAQ card (NI USB-6341, National Instruments).
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