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Bond enzyme pretreatment kit

Manufactured by Leica
Sourced in United Kingdom, Germany

The Bond Enzyme Pretreatment Kit is a laboratory equipment product designed for the preparation and pretreatment of samples prior to laboratory analysis. It is a reagent kit that contains the necessary components to perform enzymatic digestion and other pretreatment steps to prepare samples for further processing and testing.

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11 protocols using bond enzyme pretreatment kit

1

Dual Immunohistochemical Staining Protocol

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For paraffin-embedded tissues, an initial automated dewaxing and rehydration step followed by heat-induced (100° C for 20 min) or enzyme-induced (10 to 15 min, Bond Enzyme Pretreatment Kit, Leica Biosystems, Wetzlar, Alemania) antigen retrieval was performed. Heat-induced antigen retrieval was performed using pH 8.8 ethylenediaminetetraacetic acid (EDTA)-based ready-to-use solution (Leica Biosystems). Slides were subsequently incubated with 3% hydrogen peroxide (5 min), optimally diluted primary antibody (15 to 30 min), a postprimary blocking reagent (to prevent nonspecific polymer binding) (8 min), horseradish peroxidase-labeled polymer (8 min), and diaminobenzidine substrate (10 min). All reagents were components of the Bond Polymer Refine detection system (Leica Biosystems). New adhesive labels needed for the second staining procedure were applied to the slides. A second immunophosphatase (AP) procedure was then performed, omitting the dewaxing, rehydration and epitope retrieval steps. The primary antibody was applied for 40 min, followed by incubation with postprimary AP blocking reagent (20 min) and AP-labeled polymer (30 min), both of which are components of the Bond Polymer AP Red detection system (Leica Biosystems). The AP reaction was carried out with the Fast Red substrate included in the Bond Polymer AP Red detection system. Hematoxylin counterstaining was performed.
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2

Immunohistochemical Staining of ZNF554

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Five-micrometer-thick tissue sections were cut and mounted on SuperFrostTM Plus slides (Thermo Fisher Scientific, Waltham, MA, USA) and stored at 4 °C until the staining. Immunostaining was carried out using the Novolink Polymer Detection System (Leica-Novocastra, Nussloch, Germany) according to the manufacturer’s protocol. Slides were dewaxed using xylene and rehydrated in graded alcohol series. Endogenous peroxidases were blocked with 10%H2O2 in methanol (20 min, room temperature). Antigen retrieval was performed at 37 °C for 5 min using the Bond Enzyme Pretreatment Kit (Leica Biosystems). After blocking non-specific binding with the Novocastra Protein Block (10 min, room temperature), slides were incubated with mouse polyclonal anti-ZNF554 antibody (Abnova, Taipei, Taiwan) at 1:50 dilution overnight at 4 °C. After post-primary amplification (30 min, room temperature), slides were incubated with the Novolink Polymer (30 min, room temperature) and visualized with 3,3′-diaminobenzidine (DAB) for 10 min. Finally, sections were counterstained with hematoxylin, and these were mounted (DPX Mountant; Sigma-Aldrich, St. Louis, MO, USA) after dehydration. The primary antibody was omitted in negative controls.
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3

Automated RNA-ISH Assay for Repeat RNA Detection

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Detection of each of the repeat RNA levels was performed with an automated RNA-ISH assay on the Leica Biosystems BondRx 6.0 auto-stainer platform using the Affymetrix ViewRNA platform. The ViewRNA eZL Detection Kit (Affymetrix) was used on the Bond RX immunohistochemistry and ISH Staining System with BDZ 6.0 software (Leica Biosystems). The Bond RX user-selectable settings for part 2 were as follows: VjewRNA eZ-L Detectjon 1-plex (Red) protocol; ViewRNA Dewax1 Preparation protocol; ViewRNA Enzyme 2 (10 (link)); ViewRNA Probe Hybridization 3hrs. With these settings, the RNA unmasking conditions for the FFPE tissue consisted of 10-minute incubation with Proteinase K from the Bond Enzyme Pretreatment Kit at 1:1000 dilution (Leica Biosystems). HERV-K (Cat# DVF1-19321), HSATII (Cat# VA1-10874), LINE1 (Cat# DVA1-19767), and HERV-H (Cat # DVF1-19702) Ez probes were diluted as 1:40 in ViewRNA Probe Diluent (Affymetrix). Post run, slides were rinsed with water, air dried for 30 minutes at room temperature and mounted using Dako Ultramount (Dako, Carpinteria,CA).
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4

Immunohistochemical Profiling of FGFR1 and pFGFR1 in CNS Pathologies

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A commercially available tissue microarray (TMA) (CNS2081, US Biomax) with 208 cores obtained from CNS pathologies was screened for FGFR1 and pFGFR1 expression by immunohistochemistry (IHC). The TMA included adult and pediatric HGGs, LGGs, meningiomas, and medulloblastomas alongside healthy controls. Prior to staining, the TMA slide was heated at 70°C before immersion in xylene. Rehydration in absolute ethanol (Sigma) was followed by 90% ethanol and finally 70% ethanol. Enzyme antigen retrieval was achieved using Bond Enzyme Pre-treatment Kit (Leica Biosystems). Endogenous peroxidase activity was blocked using Bloxall (Vector Laboratories). Protein blocking was then performed with 10x casein (1:10) (Vector Laboratories). Rabbit anti-FGFR1 primary antibody (Sigma) or anti pFGFR1 (Cell signaling) was added at 1:3,000 and 1:100 concentrations followed by incubation with the anti-rabbit polymer horseradish peroxidase (HRP) secondary antibody (MenaPath). The slide was developed with ImmPACT 3,3'-diaminobenzidine (DAB) HRP substrate (Vector Laboratories) and counterstained using in-house Mayer's haematoxylin, dehydrated and mounted with DPX. An Aperio scanner (Leica Microsystems, Milton Keynes, UK) was used for visualization and scoring of the stained cores.
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5

Automated In Situ Hybridization for CDX2 mRNA

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Automated ISH assays for human CDX2 mRNA were performed using View- RNA eZL Detection Kit (Affymetrix) on the Bond RX immunohistochemistry and ISH Staining System with BDZ 6.0 software (Leica Biosystems). Formalin-fixed paraffin-embedded (FFPE) tissue sections on slides were processed automatically from deparaffinization, through ISH staining to hematoxylin counterstaining. Briefly, 5 mm-thick sections of formalin-fixed tissue were baked for 1 hour at 60C and placed on the Bond RX for processing. The Bond RX user-selectable settings were as follows: ViewRNA eZ-l Detection 1-plex (Red) protocol; ViewRNA Dewax1 Preparation protocol; View RNA HIER 10 minutes, ER1 (95); ViewRNA Enzyme 2 (10); ViewRNA Probe Hybridization. With these settings, the RNA unmasking conditions for the FFPE tissue consisted of a 10-minute incubation at 95 C in Bond Epitope Retrieval Solution 1 (Leica Biosystems), followed by 10-minute incubation with Proteinase K from the Bond Enzyme Pretreatment Kit at 1:1000 dilution (Leica Biosystems). Human CDX2 Ez probes were diluted as 1:40 and 1:20 respectively in ViewRNA Probe Diluent (Affymetrix). Post run, slides were rinsed with water, air dried for 30 minutes at room temperature and mounted using Dako Ultramount (Dako, Carpinteria, CA), and visualized using a standard bright-field microscope.
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6

Immunohistochemical Staining for Tenascin-C

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Immunohistochemical staining on formalin‐fixed paraffin‐embedded sections was performed using an autostainer Leica Bond‐III (Leica Biosystems, Melbourne, Australia) according to the manufacturer's protocol. For antigen retrieval, slides were treated with Enzyme 1 using a Bond Enzyme Pretreatment Kit (AR9551; Leica Biosystems, Newcastle‐upon‐Tyne, UK) for 5 min at 37 °C. Slides were then incubated for 15 min at room temperature with a commercially available mouse monoclonal antibody for TNC (4F10TT, 1:1000 dilution; Immuno‐Biological Laboratory Co., Ltd., Gunma, Japan), which recognizes epidermal growth factor (EGF)‐like domain, constitutive sites of the TNC molecules.12 Antibody detection and counterstaining with haematoxylin were performed using Bond Polymer Refine Detection Kit (DS9800; Leica Biosystems). Non‐immunized mouse IgG (X0931, 1:1000 dilution; Dako, Glostrup, Denmark) was substituted as a negative control for the primary antibody against TNC to exclude possible false‐positive responses from the secondary antibody or from non‐specific binding of IgG.
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7

Histological Analysis of Cochlear Implant Tissue

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Material for histological examination was gained from the RW area in patients later receiving a cochlear implant. Tissue sections from formalin-fixed, paraffin-embedded tissue were stained with standard hematoxylin-eosin (H&E, Carl Roth, Karlsruhe, Germany). In addition, an iron stain (“Prussian blue,” pretreatment with hydrochloric acid 5%, Carl Roth, Karlsruhe, Germany) followed by potassium-hexacyanoferrate (II) trihydrate, 1:100, Sigma-Aldrich) was performed to visualize blood residua. To perform immunohistochemistry, the slides were pretreated with enzyme (BOND Enzyme Pretreatment Kit, Leica Biosystems, Nussloch, Germany) for 10 min for antigen retrieval. CD68 immunohistochemistry (clone KP1 1:100, Dako, Agilent Technologies, Santa Clara, CA, United States) was utilized to label macrophages of patients No. 11 and 13. Cytokeratin Pan Plus (PanCKplus) immunohistochemistry (pH 9 for 10 min, BMS057, Zytomed Systems, Berlin, Germany) was used to label the epithelial surface.
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8

Automated In Situ Hybridization for CDX2 mRNA

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Automated ISH assays for human CDX2 mRNA were performed using View- RNA eZL Detection Kit (Affymetrix) on the Bond RX immunohistochemistry and ISH Staining System with BDZ 6.0 software (Leica Biosystems). Formalin-fixed paraffin-embedded (FFPE) tissue sections on slides were processed automatically from deparaffinization, through ISH staining to hematoxylin counterstaining. Briefly, 5 mm-thick sections of formalin-fixed tissue were baked for 1 hour at 60C and placed on the Bond RX for processing. The Bond RX user-selectable settings were as follows: ViewRNA eZ-l Detection 1-plex (Red) protocol; ViewRNA Dewax1 Preparation protocol; View RNA HIER 10 minutes, ER1 (95); ViewRNA Enzyme 2 (10); ViewRNA Probe Hybridization. With these settings, the RNA unmasking conditions for the FFPE tissue consisted of a 10-minute incubation at 95 C in Bond Epitope Retrieval Solution 1 (Leica Biosystems), followed by 10-minute incubation with Proteinase K from the Bond Enzyme Pretreatment Kit at 1:1000 dilution (Leica Biosystems). Human CDX2 Ez probes were diluted as 1:40 and 1:20 respectively in ViewRNA Probe Diluent (Affymetrix). Post run, slides were rinsed with water, air dried for 30 minutes at room temperature and mounted using Dako Ultramount (Dako, Carpinteria, CA), and visualized using a standard bright-field microscope.
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9

Porcine Circovirus Type 2 Immunohistochemistry

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Porcine circovirus type 2 antigen staining in paraffin-embedded tissue thin sections was performed by personnel in the KSVDL. Briefly, deparaffinized slide-mounted thin sections were first treated with proteinase K (1.2 mg/ml diluted in Bond Enzyme Diluent with 0.35% ProClin 950) for 10 min at room temperature (Bond Enzyme Pretreatment Kit, Leica Biosystems). Rabbit anti-PCV-2 antibody (Iowa State University) was diluted at 1:500 in PowerVision IHC/ISH Super Blocking (Leica Biosystems) and applied to the tissue section for 15 min at room temperature. Bound antibody was detected by incubation with 25 μg/ml Poly-AP anti-rabbit IgG (Leica Biosystems) in antibody diluent for 25 min at room temperature. The complex was visualized using Fast Red chromogen (Bond Polymer Refine Red Detection Kit, Leica Biosystems) and counterstained with hematoxylin.
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10

Automated Immunohistochemistry for CYP11B1 and CYP11B2

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IHC was performed on 3-μm sections cut from paraffin blocks using fully automated systems. The CYP11B1 primary antibody clone RAT-87 (MABS502; Merck) was used at a dilution of 1:100 after heat-induced epitope retrieval at pH 9.0 (BOND Epitope Retrieval Solution 2; AR9640; Leica) for 20 min. CYP11B2 primary antibody clone EPR10494 (ab168388; Abcam) was used at a dilution of 1:200 after proteolytic-induced epitope retrieval with proteinase K (BOND Enzyme Pre-Treatment Kit; AR9551; Leica) for 10 min. The primary antibody binding to tissue sections was visualized using a BOND Polymer Refine Detection system (DS9800; Leica). IHC slides were scanned using a NanoZoomer S210 (C13239; Hamamatsu) and viewed using the Hamamatsu NDP.view2 image-viewing software (U12388-01; Hamamatsu).
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