The largest database of trusted experimental protocols

4 protocols using cyp d

1

HUVEC Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
HUVEC were lysed in 50 mM Tris–HCl (pH 7.4) containing 150 mM NaCl (Sigma-Aldrich), 1% NP40 (Sigma-Aldrich), 0.25% sodium deoxycholate (Sigma-Aldrich), protease inhibitors (10 µg/mL Leupeptin, 10 µg/mL Aprotinin and 1 mM Phenylmethyl-Sulfonyl Fluoride, PMSF) (Sigma-Aldrich), and phosphatase inhibitors (1 mM sodium fluoride, 1 mM sodium vanadate, 5 mM sodium phosphate) (Sigma-Aldrich). Lysates (40 µg/lane) were separated by SDS-PAGE and transferred to nitrocellulose sheets. Western Blot analysis was performed using antibodies against OPA1, DRP1, LC3 B-I/-II, BECLIN (Cell Signalling, Euroclone, Pero, Italy), CYPD, CPT1A, GLUT1 (Thermo Fisher Scientific), BNIP3 (Sigma-Aldrich), p62 (Invitrogen, Carlsbad, CA, USA), ATGL, PLIN2 and mitochondrial oxidative phosphorylation complexes (OXPHOS) (Abcam, Cambridge, UK). Actin (Santa Cruz, Dallas, Texas, USA) was the control of equal loading. After washing, secondary antibodies labelled with horseradish peroxidase (GE Healthcare, Waukesha, WI, USA) were used. Immunoreactive proteins were detected with Clarity™ Western ECL substrate by ChemiDoc MP Imaging System (Bio-Rad). Densitometry of the bands was performed with ImageJ. The Western blots shown are representative and the densitometric analysis was performed calculating the ratio between the protein of interest and Actin on three independent experiments ± Standard Deviation (SD).
+ Open protocol
+ Expand
2

Western Blot Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in lysis buffer (50 mM Tris-HCl pH 8.0, 150 mM NaCl, 1 mM EDTA, 1% Nonidet P40 Substitute). Protein concentration was determined using the Bradford reagent (Sigma Aldrich). Equal amounts of proteins were separated by SDS-PAGE and transferred to nitrocellulose membranes by using Trans-Blot TurboTM Transfer Pack (Bio-Rad, Hercules, CA, USA). Western blot analysis was performed using primary antibodies against Pgp, PON2, TXNIP, CYP D (Thermo Fisher Scientific), SOD2, OPA1 (BD Biosciences, St. Diego, CA, USA), TRPM7 (Bethyl, Montgomery, TX, USA), MagT1 (Abcam, Cambridge, UK), SIRT2 (Merck Millipore, Burlington, MA, USA), DRP1 (Cell Signalling, Danvers, MA, USA), β-actin and GAPDH (Santa-Cruz Biotechnology, Dallas, TX, USA). Secondary antibodies conjugated with horseradish peroxidase (Amersham Pharmacia Biotech Italia, Cologno Monzese, Italy) were used. The immunoreactive proteins were detected with ClarityTM Western ECL substrate (Bio-Rad) and images were captured with a ChemiDoc MP Imaging System (Bio-Rad). Densitometry of the bands was performed with the software ImageJ (National Institute of Health, Bethesda, MD, USA). The Western blots shown are representative and the densitometric analysis was performed on three independent experiments ± SD.
+ Open protocol
+ Expand
3

Western Blot Analysis of HUVEC Lysates

Check if the same lab product or an alternative is used in the 5 most similar protocols
HUVEC were lysed in 10 mM Tris-HCl (pH 7.4) containing 3 mM MgCl2, 10 mM NaCl, 0.1% SDS, 0.1% Triton X-100, 0.5 mM EDTA and protein inhibitors, separated on SDS-PAGE and transferred to nitrocellulose sheets at 400 mA for 2h at 4 °C. Western blot analysis was performed using antibodies against P-HSP27, HSP27, DRP1, pDRP1Ser616, pDRP1Ser637, OPA1 (Cell Signaling Technology, Danvers, MA, USA), TXNIP, CYP D, ZO-1, VECAD (Thermo Fisher Scientific), HSP70 and Actin (Tebu Bio-Santa Cruz, Magenta, Italy), which were used as a control of loading. After extensive washing, secondary antibodies labeled with horseradish peroxidase (Amersham Pharmacia Biotech Italia, Cologno Monzese, Italy) were used. The Super-Signal chemiluminescence kit (Thermo Fisher Scientific) was used to detect the immunoreactive proteins. All the experiments were performed at least three times, and a representative blot is shown. Densitometry of the bands from three blots was performed with the software ImageLab (Bio-Rad, Hercules, CA, USA), and the results are expressed as the mean ± SD.
+ Open protocol
+ Expand
4

Mitochondria and Adhesion Molecule Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
To stain mitochondria and adhesion molecules, the cells were fixed in PBS containing 4% paraformaldehyde and 2% sucrose (pH 7.6), permeabilized with Triton 0.3% and incubated with antibodies anti-PLIN2 (Abcam, Cambridge, UK), CYP D, VECAD, ZO-1 and P-VECAD (Thermo Fisher Scientific) overnight at 4 °C, followed by staining with an Alexa Fluor secondary antibody (Thermo Fisher Scientific). 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI, Sigma-Aldrich) was used to stain the nuclei. Finally, the cells were mounted with ProLong™ Gold Antifade Mountant (Thermo Fisher Scientific), and images were acquired using a 40× objective in oil with an SP8 Leica confocal microscope. Alternatively, to label mitochondria for quantification, the cells grown on microscope glasses and treated for 24 h were incubated with medium containing 25 nM of MitoTracker Red CMXRos (Thermo Fisher Scientific) for 15 min at 37 °C, and then the fluorescence was read (λexc = 570 nm, λemm = 599 nm) using a Varioskan LUX Multimode Microplate Reader (Thermo Fisher Scientific). Fluorescence analysis was performed by quantifying the intensity of the staining signal using ImageJ. Colocalization analysis of two proteins was performed using the Jacop plugin of ImageJ to analyze the merging of the two colors. The results are expressed as the mean ± SD.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!