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11 protocols using tet on system

1

Quantification of Oxysterol Metabolites

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7k27OHC, 7β27OHC, 7α27OHC, and 7β27OHC-d6 were obtained from Avanti Polar Lipids, Inc. (Alabaster, AL), [1,2-3H]cortisone, [1,2,6,7-3H]cortisol, and [1,2,6,7-3H] corticosterone from American Radiolabeled Chemicals (St. Louis, MO), and all other chemicals from Sigma-Aldrich (Buchs, Switzerland) of the highest grade available. Cell culture media were purchased from Sigma-Aldrich and Invitrogen (Carlsbad, CA) and FBS approved for use with the Tet-on system from Clontech (Mountain View, CA). UHPLC-grade purity methanol, acetonitrile, and formic acid were from Biosolve (Dieuze, France). 5H-1,2,4-triazolo(4,3-a)azepine,6,7,8,9-tetrahydro-3-tricyclo(3-3-1-13-7)dec-1-yl [T0504; also known as Merck-544 (25 (link))] was purchased from Enamine (Kiev, Ukraine).
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2

Inducible E4-ORF3 Expression Cell Line

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Clontech’s Tet-On system was used to generate a stable E4-ORF3-inducible cell line. A PCR-generated amplicon consisting of the Ad2 E4-ORF3 coding region was cloned into the BamHI and EcoRI restriction enzyme sites of the pUHD10-3 vector, fused at the N-terminus with an HA epitope and placing it under the control of a doxycycline (dox)-inducible promoter element (pTet-HA-E4-ORF3). The resulting plasmid construct was cotransfected into U2OS-Tet-On osteosarcoma cells with pTK-Hyg (Clontech) using Fugene 6. Two days post transfection, cells were treated with 200 μg/mL G418 and 100 μg/mL Hygromycin B to select for cells with pTet-HA-E4-ORF3. Individual, drug-resistant colonies were isolated, amplified, and treated with 1 μg/mL dox for 48 h to screen for HA-E4-ORF3 expression. One cell subclone that exhibited no E4-ORF3 expression minus the addition of dox and levels of E4-ORF3 equivalent to that observed following Ad5 infection was chosen for subsequent use (termed Tet-E4-ORF3 cells).
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3

Tet-Inducible Cell Lines for p14ARF Study

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Tet-inducible cell lines were established by inserting p14ARF-GFP-IRES-Luciferase cassettes into the Tet-on system (Clontech). First, the Tet receptor (Tet-R) expressing plasmids were introduced into LNCaP or C4-2B cell lines and selected by zeocin antibiotics. Secondly, stable cell lines of Tet-R-LNCaP or Tet-R-C4-2B were transfected with plasmids containing p14ARF-GFP-IRES-Luciferase and selected by Puromycin. For IGF stimulation, 22Rv1 cells were treated with IGF at a concentration of 100 μg/ml for 6 hrs. For migration assay, cells were grown until 70–80% confluence followed by serum starvation for 40 hrs. Cells were seeded at a density of 5 × 104/well for PC3 cells or 7.5 × 104/well for LNCaP cells in serum-free medium into the upper chamber with 8 μm polyethylene terephalate membrane filters (Falcon cell culture insert, Becton-Dickinson). Cells were allowed to migrate for 24 hrs for PC3 cells or 48 hrs for LNCaP cells in a humidified chamber at 37°C with 5% CO2. Non-migrant cells on the upper side of the filters were removed using cotton swab. Filters containing cells were fixed with 4% formaldehyde for 15 min, and cells in the lower filter were stained with 0.5% crystal violet and counted from three microscopy fields.
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4

Lentiviral Transduction of Pancreatic Organoids

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Pancreatic organoids were infected with a two-vector lentivirus-based Tet-on system (Clontech). Coding sequences for HA-tagged WT and 6S-A Ngn3, fused with GFP-2A cleavage peptide sequence at their N-terminus, were cloned into the pLVX-TRE3G vector (Clontech). Viruses were generated in HEK293T cells, titrated with the LentiX titration kit (Clontech) and used at multiplicity of infection of 10 for the transgene, or 20 for the transctivator Tet3G. Organoids were dissociated to small clusters by TrypLE (Gibco) treatment for 10 min at 370C. Dissociated organoids were incubated with the viruses and 8μg/ml polybrene (Sigma) in expansion media supplemented with 10μM ROCKI (Sigma) and spun for 1h at 300xG at room temperature. After spinoculation, infected organoids were incubated in a cell culture incubator at 370C for 5-6 hours before plating in matrigel with fresh media supplemented with ROCKI.
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5

Establishing Inducible ROR Cell Lines

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Doxycycline-inducible ROR stable cell lines were generated by transfecting a pTRE2 expression vector (Clontech, Mountain View, CA, USA) containing RORα or RORγ, into CHO Tet-on cells (Clontech) followed by transfection with the pGL4.27 luciferase (LUC) reporter vector (Promega, Madison, WI, USA) driven by 5xRORE. Single clones of pGL4.27-5xRORE- and pTRE2-ROR-expressing cells were selected from a medium containing hygromycin (Invitrogen, Grand Island, NY, USA) and puromycin (Sigma–Aldrich), respectively. CHO Tet-on cell lines were cultured in F12 medium supplemented with 10% FBS, and suitable for use in the Tet-on system (Clontech). To induce ROR expression, cells were treated for 20 h with 1 μM doxycycline in the presence or absence of a dilution series of the isoflavones. All the assays were performed in triplicate and repeated independently at least twice. RORE-mediated activation of the LUC reporter was measured with a Luciferase Assay Substrate Kit (Promega). cAMP-based cell viability was evaluated by CellTiter-Glo Luminescent Cell Viability Assay (Promega).
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6

Inducible Gene Expression Using Tet-On 3G

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The 3rd generation Tet-on System was purchased from Clontech Laboratories (Cat. number 631167) (A Takara Bio Company, CA, USA). This Tet-On 3G System is an inducible gene expression system for mammalian cells. The system consists of the Tet-On 3G transactivator, TetR (Figure S1A), and contains a gene of interest (GOI) under the control of a TRE3G promoter (pTRE3G) (Figure S1B, 1C) which will express high levels of GOI driven by TetR with Dox induction [38 (link)–41 (link)].
Full length of mouse wild-type STAT3 cDNA was cloned from ESCs cDNA pool by PCR, constitutive activated STAT3 (CA-STAT3) or overexpression of pSTAT3 was obtained from pXJ40-CA (kindly provided by Professor Cao Xinmin) [42 (link)], and NlsCre was purchased from commercial entities. CA-mSTAT3 and NlsCre were cloned into a TetR response vector controlled by the tetracycline responsive element (pTRE-), fused with C-T2ACherry and C-IRESzsGreen, respectively (Figure S1).
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7

Inducible MEG3 Plasmid Construction

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MEG3 plasmid construction and stable transfection were performed as previously described. 5 Briefly, for constructing an inducible MEG3 transcription system, namely pTRE-MEG3, the cDNA sequence of MEG3 was cloned into pTRE-Tight (ClonTech). In addition, pCMV-rtTA-puro was generated using the Tet-On system (ClonTech) as previously reported. 5 Then, the above two plasmids were cotransfected into PDFS cells at a ratio of 3 to 1 using Lipofectamine 3000 reagent (Invitrogen). Successfully constructed cells were separated and propagated by puromycin selection. Transfection efficiency was then measured through quantitative real-time polymerase chain reaction (qRT-PCR) after adding doxycycline (Dox) to induce MEG3 expression.
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8

Constitutive and Inducible dCas9-VPR Expression

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DCas9-VPR was constructed by fusing the nuclease deficient Cas9 (dCas9) with transcription activator VP64, p65, and Rta in tandem as described by Chavez et al. (Maeder et al., 2013 (link)). For constitutive expression, dCas9-VPR was placed behind a CAG promoter in a PiggyBac vector also containing a PGK promoter driving a hygromycin resistance gene. For inducible expression from the AAVS1 locus, dCas9-VPR was placed behind a TRE promoter in the AAVS1 homologous recombineering donor plasmid, as shown in Fig. S2A. DCas9-VP64 was constructed by fusing dCas9 with VP64. Tet-On system was obtained from Clontech (http://www.clontech.com). PiggyBac plasmids were generous gift from the Sanger institute, Cambridge, UK (http://www.sanger.ac.uk). The multiple NANOG gRNA expression plasmid was constructed by SynGene (http://syngen.tech) as depicted in Fig. 2A.
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9

Inducible ΔLf Expression in Cell Lines

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The stable expression of ΔLf was realized using the tetracyclin inducible Tet-on system (Clontech, Mountain View, CA). The human breast cancer MDA-MB-231 (ATCC HTB-26) cell line was grown in DMEM (Dubelcco's modified Eagle's medium, Thermo Fisher Scientific, Waltham, MA) containing 10% (v/v) FCS, 2 mM L-glutamine and 1% (w/v) penicillin/streptomycin and cultured at 37°C in a humidified atmosphere with 5% CO2. MDA-MB-231 cells were further stably transfected with the pTRE responder construct containing the ΔLf cDNA, as described in [41] (link) using the Dreamfect reagent (OZ Biosciences, France) according to the manufacturer's instructions. Isolated clones were expanded to obtain cells named MDA-MB-231 dox-. Expression of ΔLf was followed as described [5] (link). Clones used for the study did not produce any detectable ΔLf without induction. Stable inducible ΔLf-expressing HEK293 (ATCC CRL-1573), HeLa (ATCC CCL-2) and MCF7 (ATCC HTB 22) cell lines were already available in our laboratory.
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10

Inducible TALE-Histone Demethylase Cell Lines

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The TALE proteins, produced in-house by the TACGENE platform, are composed of the N-Terminal Region (NTR) and the Central Repeat Domain (CRD) with 17.5 repeated motifs binding the following α-satellite sequence from D7Z1 centromeric region: 5' TGCAATTGTCCTCAAATC 3'. In the N-terminal part of the TALE, the NLS from SV40 and three HA tags were added. At the C-terminal part of the TALE was fused either the cDNA of the wild-type histone lysine demethylase hJMJD2B (kindly given by Sophie Cell lines were generated from U2OS cells using the Tet-On ® system from Clontech ® and following the manufacturer's instructions. In these stable cell lines, two plasmids were integrated successively. The first expresses the transactivator protein under a CMV promoter and possess a G418 resistance gene for selection. The second contains our TALE fusion protein (TALE-hJMJD2B or TALE-GFP) expressed under the PTRE3G promoter containing seven Tet-O repeats and was co-introduced in cells with a linear puromycin marker for selection. Individual colonies were isolated using 150 µL glass cloning cylinders from Sigma-Aldrich ® . The list of plasmids we used is presented in Table S2.
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