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5 protocols using sc 8828

1

OXPHOS Protein Detection Protocol

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Cells were washed with 1mL cold 1x PBS and scraped in 40µL
bio-plex cell lysis buffer (Biorad), and processed according to the
manufacturers guidelines. OXPHOS proteins were detected using a cocktail of five
monoclonal antibodies directed against structural components of the different
OXPHOS complexes (MS601, MitoSciences, Eugene, OR), as previously described
(Hoeks et al., 2010 (link)). Furthermore,
VDAC (sc-8828, Santa Cruz Biotech, Heidelberg, Germany), HSP60 (Sc-1052 Santa
Cruz Biotech, Heidelberg, Germany) and HSP90 (610418, BD Biosciences, Breda,
Netherlands) were detected using separate antibodies from different
manufacturers.
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2

Protein Extraction and Analysis from HEK293T Cells

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HEK293T cells were grown on 60 mm culture plates and transfected as described. For protein determination in whole-cell lysates, cells were washed with ice-cold PBS and lysed for 30 min on ice with RIPA buffer containing: sodium pyrophosphate 10 mM, Tritone X-100 2%, NaCl 100 mM, 5 mM EDTA pH 7.4, 5 mM EGTA pH 7.4, deoxycholate 0.5%, NaF 25 mM, sodium-orthovanadate 1 mM. Lysates were centrifuged at 4 °C for 20 min at 12,000 rpm and supernatant collected. For determination of protein expression in mitochondria, cell lysates were fractionated44 (link),106 . Protein concentration in the samples was determined using Pierce BCA protein assay kit (Thermo Fisher Scientific) according to the manufacturer’s protocol. Equal amounts of protein (20ug) from lysates were resolved by SDS-PAGE and transferred to a nitrocellulose membrane. Immunoblot analysis (anti myc – Abcam ab18185 and anti VDAC1 [N-18] – Santa Cruz sc-8828) was performed as described previously23 (link),44 (link).
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3

Mitochondrial Protein Analysis in Human Muscle

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Western blot analyses were performed in RIPA-lysates of human muscle tissue. Protein concentration was determined using the Bio-Rad RC/DC kit (Bio-Rad Laboratories, Veenendaal, The Netherlands). Equal amounts of protein were loaded on 12% TGX gels (Bio-Rad Laboratories) or 4–12% Bolt gradient gels (Novex, Thermo Fisher Scientific, Bleiswijk, The Netherlands). Proteins were transferred to nitrocellulose with the Trans-Blot Turbo transfer system (Bio-Rad Laboratories). Primary antibodies: a cocktail of mouse monoclonal antibodies directed against human OXPHOS (dilution 1:10,000; ab110411, Abcam, Cambridge, UK), two mitochondrial markers directed against TOMM20 (dilution 1:10,000; ab186734; Abcam), porin/VDAC (dilution 1:10,000; sc-8828, Santa Cruz Biotechnology, Dallas, Texas), SR-actin (dilution 1:5,000; A-2172; Sigma Aldrich, Zwijndrecht, The Netherlands), PGC-1 (dilution 1:10,000, 516,557, Calbiochem), FIS-1 (dilution 1:1000, sc-98900, Santa Cruz Biotechnology, Dallas, Texas), PINK-1 (dilution 1:2000, sc-33796, Santa Cruz Biotechnology, Dallas, Texas) and OPA-1 (dilution 1:2500, 612,606, Becton Dickinson). The specific proteins were detected using secondary antibodies conjugated with IRDye680 or IRDye800, and were quantified with the CLx Odyssey Near Infrared Imager (Li-COR, Westburg, Leusden, The Netherlands).
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4

Immunomodulatory Effects of ASC-MNC Coculture

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ASC were harvested and seeded in 24-well plates (100,000 cells/well) for 24 h in RPMI supplemented with 10% FCS. Then, 24 h later, MNC were added in the presence or absence of phytohemagglutinin (PHA, 5 µg/mL, Sigma-Aldrich). ASC/MNC ratios of 1:5 were used. For mRNA analyses, the culture period was 24 h, whereas it was 48 h when conditioning media were collected. In that latter case, IL-17A neutralizing antibodies (Secukinumab, Novartis PHArma S.A.S., 92506, Rueil-Malmaison, France) at 50 μg/mL or IFNγ-neutralizing antibodies (Invitrogen, 16-7318-81) at 50 μg/mL were eventually added from the beginning of cultures. For blocking experiments, ASC/MNC cocultures were treated with PD-L1 neutralizing antibodies (R&D Systems, Minneapolis, MN, USA; AF156) at 1 or 10 μg/mL, or with irrelevant polyclonal goat IgG (sc-8828; Santa-Cruz Biotechnology/INC, Heidelberg, Germany) at 10 μg/mL, or Secukinumab at 50 μg/mL.
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5

Western Blot Analysis of Muscle Proteins

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Western blot analyses were performed in whole lysates of human muscle tissue and C2C12 myotubes and in isolated skeletal muscle mitochondria (wild-type and ZDF rats). Coomassie Brilliant Blue staining was used to determine total protein content. Analyses were performed using 10% polyacrylamide-SDS gels as previously described [29 (link), 30 ]. Equal protein loading was confirmed by western blotting of porin/voltage-dependent anion channel (VDAC) for isolated mitochondria and α-actin for tissue and cells. Monoclonal antibodies against ANT1 (MSA02; Mitosciences, Eugene, OR, USA; mouse IgG; dilution 1:2,000), α-actin for tissue (sc-58670; Santa Cruz, CA, USA; mouse IgM; dilution 1:10,000), β-actin for cells (A-5316; Sigma-Aldrich, St. Louis, MO, USA; mouse IgG1; dilution 1:25,000) and a polyclonal antibody against porin/VDAC (sc-8828; Santa Cruz, CA, USA; goat IgG; dilution 1:10,000) were used. For validation, we used a protein marker (Precision Plus All Blue Prestained Protein Standards from Bio-Rad Laboratories, Veenendaal, the Netherlands; no. 1610373) on the same blots. All of these commercially available antibodies showed a single distinct band at the molecular weight indicated in the datasheets. Bands of interest were detected and quantified with Odyssey Infrared Imager (LI-COR, Leusden, the Netherlands).
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