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Abi quantstudio 5 pcr machine

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI QuantStudio 5 PCR machine is a real-time quantitative PCR (qPCR) system designed for genetic analysis. It is capable of performing polymerase chain reaction (PCR) amplification and detection of nucleic acid sequences in a controlled thermal environment.

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5 protocols using abi quantstudio 5 pcr machine

1

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA was reverse-transcribed into complementary DNA (cDNA) using the RT First Strand cDNA Synthesis Kit (Roche, Basel, Switzerland). Quantitative real-time PCR (qRT-PCR) was performed using 2 × SYBR Green qPCR Master Mix (Servicebio, Wuhan, China) by an ABI QuantStudio 5 PCR machine (Applied Biosystems; Thermo, Waltham, MA, USA) with the following programs: 1 cycle at 95 °C for 10 min, 40 cycles at 95 °C for 15 s and 60 °C for 30 s. The primer sequences are provided in Table 2. Relative mRNA levels of specific genes were quantified using the 2−ΔΔCt method values with β-actin as the reference gene.
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2

RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted with RNAiso Plus Reagent (TransGen Biotech, China) and reverse-transcribed into complementary DNA (cDNA) using the RT First Strand cDNA Synthesis Kit (Roche, Germany). Quantitative real-time PCR (qRT-PCR) was performed using an ABI QuantStudio 5 PCR machine (Applied Biosystems; Thermo, Waltham, MA, USA) at 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s and 60 °C for 30 s, with 2×SYBR Green qPCR Master Mix (Servicebio, Wuhan, China). The primer sequences are provided in Table 3. Relative mRNA levels of specific genes were quantified using the 2−ΔΔCt method values with respect to the values for β-actin.
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3

Quantifying Gene Expression in Chicken Tissues

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Total RNA was extracted from intestine, kidney, and eggshell gland using TransZol Up (TransGen Biotech, China). Then the concentration of the RNA was measured by spectrophotometry (Eppendorf, Germany), and verified the RNA purity by calculating the ratio between the absorbance values at 260 and 280 nm (A260/280 ≈ 1.75–2.01). Next, reverse transcription was performed using total RNA (1 μg) for first-strand cDNA synthesis with the Transcriptor First Strand cDNA Synthesis Kit (Roche, Germany). The cDNA was amplified in a 20 μl PCR reaction system containing 0.2 μmol/L of each specific primer (Sangon, China) and of the SYBR Green master mix (Roche, Germany) according to the manufacturer’s instructions. Real-time PCR was performed at the ABI QuantStudio 5 PCR machine (Applied Biosystems; Thermo, United States), the primers were as follows: chicken NPt2b: forward, ACTGGCTTGCTGTGTTTGC and reverse, AGGGGCATCTTCACCACTTT; NPt2a: forward, CCAAACTGCACGGCTTCT and reverse, TGGGAGGTCAGT GTTGATGA; CaBP-D28k: forward, TGTTATGGAGTGCAGG ATGG and reverse, TAGAGCGAACAAGCAGGTGA; PMCA1b: forward, TTCAGGTACTCATGTGATGGAAGG and reverse, CAGCCCCAAGCAAGGTAAAG; β-actin: forward, CTGGC ACCTAGCACAATGAA and reverse, CTGCTTGCTGATCCA CATCT. Primers against β-actin was used as internal controls, and all of the mRNA values were normalized the differences between individual samples.
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4

Intestinal Total RNA Extraction and qPCR

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Total RNA was extracted from the intestine using commercial kit (Xinsaimei, Suzhou, China). Then the concentration of the RNA was measured by spectrophotometry (Eppendorf, Hamburg, Germany), and the RNA purity was verified by calculating the ratio between the absorbance values at 260 and 280 nm (A260/280 ≈ 1.75–2.01). Next, reverse transcription was performed using total RNA (1 μg) for cDNA synthesis with the kit (Cowin, Beijing, China). The cDNA was amplified in a 20-μL PCR reaction system according to the manufacturer’s instruction (Cowin, Beijing, China). Real-time PCR was performed at the ABI QuantStudio 5 PCR machine (Applied biosystems Inc., Carlsbad, CA). Real-time PCR was performed at 95°C for 30 s of predenaturation, followed by 40 cycles, with each cycle consisting of denaturation at 95°C for 5 s and annealing and extension at 60°C for 30 s. All samples were run in duplicate, and the specificity of the amplification product was verified by the standard curve and dissolution curve. Primers used in this study were designed using Primer 5.0 software and synthesized by Sangon Biotech (Shanghai, China, Table 1). Primers against GAPDH were used as internal controls, and mRNA expression was quantified according to the comparative CT method (2-△△Ct).
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5

Quantitative Gene Expression Analysis via qRT-PCR

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Total RNA was extracted from the cell using TRIzol (Invitrogen, USA). The RNA concentration was measured by spectrophotometry (Eppendorf, Germany), and RNA purity veri ed by calculating the ratio between the absorbance values at 260 and 280 nm (A260/280 ≈ 1.75-2.01). Then 1 μg RNA was reverse-transcribed to cDNA using DNase I (Invitrogen, USA) according to the manufacturer's protocol. Real-time PCR was performed using ABI Quant Studio 5 PCR machine (Applied Biosystems; Thermo, United States).
Following the manufacturer's protocol, the cDNA was ampli ed in a 20 μL PCR reaction system containing 0.2 μmol/L of each speci c primer (Sangon, Shanghai, China) and the SYBR Green master mix (Roche, Germany). The primer were designed with Primer 6.0 software, and were based on published target sequences (Table 1). Primer against GAPDH was used as internal controls, and all of the mRNA values were normalized with the differences between individual samples. Relative gene expression was determined using the 2 -ΔΔCt method.
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