The largest database of trusted experimental protocols

Neutravidin resin

Manufactured by Thermo Fisher Scientific
Sourced in United States

NeutrAvidin resin is an agarose-based chromatography resin that binds strongly to biotin and biotinylated molecules. It is a derivative of avidin that has been modified to reduce non-specific binding.

Automatically generated - may contain errors

7 protocols using neutravidin resin

1

Affinity Purification of GFP-Hec1 Complexes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells expressing GFP-Hec1 were lysed and subjected for sonication in Lysis 125 buffer. Cell extract was first pre-clarified with neutravidin-resin (Thermo Fisher Scientific Inc., Waltham, MA), and then incubated with the neutravidin-resin conjugated with compound-biotin for 3 hrs at 4ºC. The resin was then collected, and washed with 50 resin volumes washing buffer (Lysis 125 buffer with 0.15% trion-x-100). Finally, the proteins on resin were eluted with 2x SDS loading buffer by boiling the resin for 10 min at 95°C heat plate. The supernatants were subjected to SDS-PAGE and Western blot analysis.
+ Open protocol
+ Expand
2

Biotinylation of Surface Proteins in Brain Slices

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surface protein biotinylation on brain slices was performed following established protocols (Kato et al., 2012 (link); Knackstedt et al., 2013 (link); Pabba et al., 2014 (link)). Briefly, rat cerebellar slices (300 μm) after drug treatments were incubated in ACSF containing 1 mg/ml EZ-LINK-Sulfo-NHS-SS-Biotin (Thermo Fisher Scientific) for 45 min at 4°C. To biotinylate surface proteins of HEK293T cells, cells were incubated with EZ-LINK-Sulfo-NHS-SS-Biotin for 30 min at 4°C. Unreacted biotinylation reagent was removed by washing and was quenched by 100 mm glycine. Slices and HEK293T cells were homogenized by sonication in an HEPES-Triton-SDS lysis buffer containing the following (in mm): 25 HEPES, 150 NaCl, 1% Triton X-100, 0.5% SDS, and a protease/phosphatase inhibitor cocktail (Thermo Fisher Scientific). After centrifugation (1000 × g, 10 min) at 4°C, the supernatant was collected and used as the total protein fraction. An equal aliquot of total proteins was incubated with neutrAvidin resin (Thermo Fisher Scientific) overnight at 4°C. Biotinylated proteins (i.e., surface proteins) were precipitated by centrifugation and were then eluted with an LDS sample buffer (boiling for 3 min). The abundance of proteins of interest in surface and total fractions was analyzed by immunoblotting.
+ Open protocol
+ Expand
3

Gβγ Subunit Binding Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The composition of buffers, binding conditions and peptides sequences are described in Supplementary Methods. Peptides were tagged with Biotin at the N-terminus (Supplementary Table S1). For the resin-based binding assay, peptides (50 ng) were immobilized onto Neutravidin resin (Thermo-Scientific, Waltham, MA, USA). The immobilized peptides were incubated with purified Gβγ (Millipore, Billerica, CA, USA) (50 ng, 30 min, at 4 °C). Unbound Gβγ (flow-through from binding step) was collected and used as a loading control. Samples were analyzed by SDS-PAGE followed by western blotting (Gβ antibody (T-20, Santa Cruz, Dallas, TX, USA)). Densitometry analysis was performed with Imagelab5.0 (Bio-Rad, Hercules, CA, USA). For the plate-based in vitro binding assay, peptides were immobilized in neutravidin pre-coated 96-well plates (Thermo-Scientific). The immobilized peptides were incubated with purified Gβγ (Millipore) (30 min, RT). The quantification of bound Gβγ was determined by immuno-detection using the QuantaBlu kit (Thermo-Scientific), and measured with a plate reader (Tecan, Mannedorf, Switzerland, Exc.420/Emiss. 325 nm). Results are shown as relative binding compared to control group. The data are presented as mean ± s.e.m. Statistics were performed using a two-tail Student’s t-test with an accepted significance level at P<0.05.
+ Open protocol
+ Expand
4

Quantifying Membrane Klotho Levels in Podocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
To assess the amount of membrane Klotho protein in human podocytes, cells were incubated for 30 min with biotin solution (Thermo Fisher Scientific, catalog no. 21338) in PBS (pH 8.0). Excess biotin was washed out with PBS with the addition of glycine (100 mM, pH 8.0). Subsequently, the cells were lysed, as described previously [52 (link)]. A portion of the lysate was frozen for further assessments of total Klotho protein levels in podocytes. The majority of the lysate was mixed with Neutr/Avidin resin (Thermo Fisher Scientific, catalog no. 53150) and incubated on a rotor at 4 °C overnight. The next day, Neutr/Avidin resin with bound biotinylated membrane proteins was washed five times with PBS and heated at 96 °C for 10 min with 2× concentrated loading buffer (0.5M Tris, 10% sodium dodecyl sulfate (SDS), 30% glycerol, 9.3% DL-dithiothreitol, and 0.012% bromophenol blue). The samples were then analyzed by Western blot together with the portion of the lysate that contained total Klotho in podocytes (heated at 96 °C for 2 min in 1× concentrated loading buffer).
+ Open protocol
+ Expand
5

Affinity Capture of 3βHSD1 Enzyme

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neutravidin resin (Thermo) was pre-incubated with GST at 4°C for 12 h before incubated with 50 μM biotin or BCA-biotin probe at 4°C. Purified GST-3βHSD1 protein as pre-incubated with DHEA (500 μM) or BCA (500 μM) before the addition of 25 μL packed BCA-biotin beads. Reactions were incubated for 4 h at 4°C for affinity capture. The binding beads were washed and eluted with loading buffer for immunoblotting detection.
+ Open protocol
+ Expand
6

Detecting Oxidized Proteins via Alkyne Probe

Check if the same lab product or an alternative is used in the 5 most similar protocols
The alkyne probe DYn-2 [4-(pent-4-yn-1-yl)cyclohexane-1,3-dione; 5 mM] (gift from Kate Carroll, The Scripps Institute, San Diego, CA, and purchased from Cayman Chemical, 11220) was added to HEK001 cells for 1 h at 37°C. The cells were lysed in modified RIPA (200 U/ml catalase, EDTA-free protease and phosphatase inhibitors) and pre-cleared of endogenous biotinylated proteins using pre-equilibrated NeutrAvidin resin (Thermo, 29202). Probe-labeled proteins were detected using click-chemistry (Invitrogen, C10276) with solubilized 4 mM biotin azide (Invitrogen, B10184). Proteins were precipitated using methanol and electrophoresed. For whole proteome detection, the membrane was blotted with streptavidin–HRP and loading antibodies [Santa Cruz Biotech, IKKα (B-8), sc-7606; GeneTex, GAPDH, 124503]. For detection of specific oxidized proteins, biotin-azide-labeled proteins were immunoprecipitated using NeutrAvidin agarose beads, eluted with 8 M guanidine-HCL, dialyzed using a Slide-A-Lyzer® MINI dialysis device (Thermo Scientific; 88401), concentrated using Amicon Ultra(3 K) centrifugal filters (Millipore, 500324) and re-probed for western analyses.
+ Open protocol
+ Expand
7

Surface Protein Biotinylation in Striatal Slices

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surface protein biotinylation was performed on striatal slices (Jin et al., 2017 ). Briefly, rat striatal slices (300 μm) after drug treatments were incubated in ice-cold ACSF containing 1 mg/ml EZ-LINK-Sulfo-NHS-SS-Biotin (ThermoFisher) for 45 min. After slices were washed and were quenched by glycine (100 mM), slices were homogenized by sonication in an HEPES-Triton-SDS lysis buffer containing (in mM) 25 HEPES, 150 NaCl, 1% Triton X-100, 0.5% SDS, and a protease/phosphatase inhibitor cocktail (ThermoFisher). After centrifugation at 800 g (10 min, 4°C), the supernatant was collected and used as the total protein fraction. An equal aliquot of total proteins was incubated with neutrAvidin resin (ThermoFisher) overnight. Biotinylated proteins (i.e., surface proteins) were precipitated by centrifugation and were then eluted with a lithium dodecyl sulfate sample buffer. Protein levels in surface and total fractions were analyzed by immunoblot.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!