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21 protocols using abcg2

1

Antibodies and Inhibitors for Stem Cell Research

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Antibodies against the C-terminal region of MAD1L1 (Cat# A300-355A) were purchased from Bethyl Laboratories (Montgomery, TX, USA). The following additional antibodies were used: against the N-terminal region of RARS (Novus Biologicals, Littleton, CO, USA, cat# PAB28524), Flag M2 (Sigma-Aldrich, St. Louis, MO, USA, cat# F1804), AIMP2 (Abcam, Cambridge, MA, USA, cat#F1804), β-actin (Proteintech Group Inc., Rosemont, IL, USA, cat#66009-1-1g), ABCG2 (Abcam, Cambridge, UK, cat# ab3380), Sox2 (Cell Signaling, Danvers, MA, USA, cat#3579), c-Myc (Cell Signaling, cat#5605s), Bmi-1 (Cell Signaling, cat#2933), FUBP1 (Abcam, cat#213528) α-tubulin (Cell Signaling, cat#2125s), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (KangChen Biotech, Shanghai, China, cat#60004), and Texas Red®-X-conjugated wheat germ agglutinin (WGA) (Thermo Fisher, Waltham, MA, USA, cat#11262), FITC-conjugated anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA). The Myc inhibitor (10058-F4) and fumitremorgin C (FTC) were purchased from Selleck Chemicals (Houston, TX, USA, cat#s7153) and Sigma-Aldrich (SKBO), respectively. Cisplatin (DDP) and 5-fluorouracil (5-FU) were obtained from Hospira Australia Pty., Ltd. (Lexia Place, Australia).
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2

Western Blot Analysis of Stem Cell Markers

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CRC tissues and cell lines were collected and lysed in radioimmunoprecipitation assay buffer with PMSF (Beyotime, Shanghai, China). Protein samples were separated by sodium dodecyl sulphate–polyacrylamide gel electrophoresis and transferred in the polyvinylidene difluoride membranes (Millipore). Then, 5% non-fat milk was used to block the membranes for 2 h. Subsequently, the membranes were incubated with primary antibodies at 4°C overnight and incubated with the corresponding horseradish peroxidase-conjugated secondary antibody. Each band was visualized by enhanced chemiluminescence reagents (Yeasen, Shanghai, China). The following antibodies were used for Western blotting: HIST2H2BF (Thermo Fisher Scientific, USA, 1:1000), NICD (CST, Beverly, MA, USA, 1:1000), Hes1 (CST, 1:1000), Hey1 (Abcam, 1:1000), CD133 (Abcam, 1:1000), CD44 (Abcam, 1:1000), ABCG2 (Abcam, 1:1000), ALDH1 (Abcam, 1:1000), Nanog (Abcam, 1:1000), Bmi-1 (Abcam, 1:1000), Oct-4 (Abcam, 1:1000), glyceraldehyde-3-phosphate dehydrogenase (Abcam, 1:1000), horseradish peroxidase-linked anti-rabbit IgG (CST, 1:3000), and horseradish peroxidase-linked anti-mouse IgG (CST, 1:3000). glyceraldehyde-3-phosphate dehydrogenase was used as an internal control.
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3

Investigating Protein Expression in DDP-Treated Cells

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Cells treated with DDP in the presence of progesterone, calcitriol, or the combination of the two were collected for protein extraction. Cell lysates were prepared with radio-immunoprecipitation assay (RIPA) buffer containing protease and phosphatase inhibitors. The protein concentration was assessed by bicinchoninic acid assay (BCA, Thermo Fisher Scientific). The supernatants with an equal amount of protein were separated on SDS-PAGE gels. Proteins then were blotted onto PDVF membranes and incubated with primary antibodies and the corresponding secondary antibodies. The antibodies used were pPI3K, ABCG1, ABCG2 from ABCAm (Cambridge, MA, USA), pERK, MDR-1 from (Santa Cruz Biotechnology, Dallas, TX, USA), pSMAD2/3, SMAD2/3 (Cell Signaling Technology, Danvers, MA, USA) and β-actin (Sigma). The enhanced chemiluminescence system was used to visualize the protein bands as recommended by the manufacturer (Thermo Fisher Scientific). Bands were quantified by densitometry using ImageJ software (version1.51j8, NIH, Bethesda, MD, USA) and protein band intensities were normalized to β-actin.
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4

Efficient Multidrug Resistance Inhibition

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The σ2 receptor ligand A011 was prepared as previously reported (Feng et al., 2019 (link)). KO143 was purchased from MedChemExpress (Monmouth Junction, NJ, United States). Cisplatin (DDP), adriamycin (ADR), paclitaxel, verapamil, mitoxantrone and rhodamine 123 (Rh123) were acquired from Solarbio (Beijing, China). Cell Counting Kit-8 (CCK-8) was bought from Dojindo Laboratories (Japan). Pgp-Glo™ Assay Systems were purchased from Promega (Madison, USA). Anti-P Glycoprotein antibody, ABCG2, GAPDH, Goat Anti-Rabbit IgG H&L Secondary Antibody (Alexa Fluor 488), Goat Anti-Rabbit IgG H&L Secondary Antibody and Goat Anti-Mouse IgG H&L Secondary Antibody were purchased from Abcam (Cambridge, United Kingdom). SlowFadeTM Gold antifade reagent was purchased from Thermo Fisher (MA, United States).
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5

Quantifying Xenograft Proliferation and Stem Cell Markers

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Xenografts were fixed in 4% paraformaldehyde, embedded in paraffin, and cut at a thickness of 4 μm. The sections were deparaffinized in xylene and incubated with the primary antibodies (Ki-67, 1:100 dilution, Abcam; ABCG2, 1:1,000 dilution, Abcam) overnight at 4°C. Three slides per groups were observed under a standard light microscope (BX53, Olympus). In each section, 10 areas were randomly selected and scored for the positive cells using an automated image analysis system (Visiomorph, Visiopharm Integrator System, Denmark).
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6

Antibodies and Reagents for Cellular Analysis

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cis-Diammineplatinum (II) dichloride was purchased from Sigma-Aldrich (St. Louis, MO, USA; P/N: P4394). Antibodies against β-catenin, GSK3β and β-tubulin were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). The antibody against PPP2AB56α was purchased from ProteinTech (Chicago, IL, USA) (P/N: 12675-2-AP). Antibodies against MRP1, ABCG2, P-glycoprotein and topoisomerase IIβ were obtained from Abcam (Cambridge, MA, USA). The antibody against EZH2 was purchased from OriGene (Rockville, MD, USA).
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7

Western Blot Analysis of MDR1 and ABCG2

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Total protein was isolated from MMTV-PyMT tumor-derived cells after 24 h treatment with the same chemotherapeutic agents as above using lysis buffer (20 mM Tris–HCl, 150 mM NaCl, 1 % Triton-X, 0.5 % NP-40, 50, mM NaF, 1 mM Na3VO4, 5 mM Sodium pyrophosphate, 0.2 mM PMSF, 1x protease inhibitor cocktail (Fisher) and 1x phosphatase inhibitor cocktail 2 (Sigma). 30 μg of protein were separated by SDS-PAGE (8 % gel), and transferred onto Immobilon-P membrane (Millipore). After transfer, membranes were blocked in 5 % non-fat dry milk in 1 % TBS with 0.1 % Tween (TBS-T) for 1 h at room temperature. Blots were incubated with the primary antibody (MDR1, 1:1000 in 1 % bovine serum albumin in TBS-T, Cell Signaling, or ABCG2, 1:100 in 5 % non-fat dry milk in TBS-T, Abcam) for 2 nights at 4 °C or β-actin (1:25000, 1 % BSA in TBS-T, Sigma) for 1 h at room temperature. Secondary antibody (anti-rabbit, anti-rat or anti-mouse IgG-HRP, 1:1000) was diluted in the same diluent as the corresponding primary antibody and incubated at room temperature for 1 h. Blots were developed with Clarity ECL regent (Bio-rad) and a ChemiDoc MP Imaging System (Bio-rad). Densitometry quantification was performed using ImageJ software (NIH). Blots are representative of three runs.
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8

Comprehensive Protein Analysis Protocol

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Cells were prepared in lysis buffer containing 50 mM HEPES (pH 7.2), 150 mM NaCl, 25 mM beta-glycerophosphate, 25 mM NaF, 5 mM EGTA, 1 mM EDTA, 1% NP-40, 1 mM sodium orthovanadate, 0.1 mM PMSF, and a Protease Inhibitor cocktail (leupeptin, pepstatin, aprotinin, and antipain; each 5 μg/ml). For secretory protein preparation, the culture medium was centrifuged, and cellular components and debris were discarded. The culture medium was concentrated using 10 K cut-off microcon (Amicon), or by adding ice-cold acetone, the precipitated protein was resuspended in lysis buffer. The proteins were separated on SDS-PAGE and transferred to a 0.45-μm Immobilon P-transfer membrane (Millipore). The membrane was blocked in 5% (w/v) non-fat milk and then probed with a primary antibody; anti-human GLRX3 antibody, beta-catenin, E-cadherin, GAPDH (Santacruz, Dallas, Texas, US), c-MET, PI3K, pAKT (Cell signaling, Danvers, Massachusetts, US), AKT, Wnt1, 3, 5a, 7b,11, 16, RhoA, RhoB, pJNK, RAC1, Dvl2 (Santacruz, Dallas, Texas, US), and ABCG2 (Abcam, Cambridge, UK). The immunoreactive material was then visualized using SuperSignal West Pico Chemiluminescent substrate (Pierce Biotechnology, Rockford, Illinois, US) according to the manufacturer’s instructions.
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9

Western Blot Analysis of Cellular Pathways

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Cells were harvested and the cell lysates were prepared using radioimmunoprecipitation assay lysis buffer (Thermo Fisher Scientific). After determination of protein concentration with a BCA assay kit, equal amount of protein samples were separated by 10% SDS-PAGE. Then the proteins were transferred to polyvinylidene difluoride membranes and blocked with 5% non-fat milk in TBST for 1 hour at room temperature. Then the membranes were incubated at 4°C overnight with the primary antibodies against the following proteins: E-cadherin, N-cadherin, vimentin, cleaved caspase-3, p53, Bax, Bcl-2, LC3I, LC3II, p-ERK, ERK, Akt, and p-Akt (diluted in 1:1,000; Cell Signaling Technology, Boston, MA, USA); ABCB1, ABCG2, phosphatidylinositol 3-kinase (PI3K), p-PI3K, mammalian target of rapamycin (mTOR), p-mTOR, and GAPDH (diluted in 1:800; Abcam, Cambridge, MA, USA). Then, the membranes were probed with secondary antibody (diluted in 1:3,000; Abcam) conjugated to horseradish peroxidase. The bands were visualized with a Plus-ECL kit (PerkinElmer, Waltham, MA, USA). The experiment was performed in triplicate.
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10

Immunocytochemical Characterization of Stem Cells

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Cell suspensions were seeded on the central concavity of a special 35 mm glass bottom plate (Nest, China) at ~ 50% confluent density. The cells were cultured overnight with or without PLA. After three washes with ice-cold PBS, cells were fixed with 4% paraformaldehyde for 15 min and then permeabilized with 0.1% Triton X-100 for 10 min. Subsequently, cells were blocked with 5% bovine serum albumin for 1 h at room temperature and incubated with an appropriate concentration of primary antibodies against Oct4, ABCG2, ALDH1, SOX2, or CD49f (Abcam, London, UK, 1:100 dilution) overnight at 4 °C. Then, the cells were incubated with Alexa Fluor® 488 conjugated goat anti-rabbit IgG (Abcam, London, UK, 1:200 dilution) or goat anti-mouse IgG (Abcam, London, UK, 1:200 dilution) secondary antibodies for 1 h. The stained cells were observed under a fluorescence confocal microscope.
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