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Clone avas 12a1

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Clone Avas 12a1 is a laboratory instrument designed for DNA cloning and amplification. It functions as a thermal cycler, providing precise temperature control and cycling to facilitate the polymerase chain reaction (PCR) process. The core function of the Clone Avas 12a1 is to enable the replication and duplication of specific DNA sequences.

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3 protocols using clone avas 12a1

1

Intracellular and Surface Marker Profiling of Embryoid Bodies

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For intracellular staining, EBs were dissociated by trypsinization and permeabilized with BD Cytofix-Cytoperm kit according to the manufacturer’s recommendations. For staining of the different cell-surface markers, EBs were dissociated in 3 mM EDTA. Anti-cTnT staining (NeoMarkers) was performed for 30 min in Perm-Wash buffer (BD Cytofix-Cytoperm kit) at a final concentration of 1:100 and revealed with an anti-mouse phosphatidylethanolamine (PE) secondary antibody (BD) at a final concentration of 1:400. For staining of cell-surface markers, all antibodies were diluted in PBS-BSA 1%. Flk1 (VEGFR2) was stained using a biotinylated antibody at 1:100 (clone Avas12a1; eBioscience) revealed by a streptavidin-PE-Cy7 secondary antibody at 1:400 (BD). PDGFRa was directly coupled to PE and used at 1:75 (clone APA5; eBioscience). CXCR4 antibody was directly coupled to A647 and used at 1:100 (clone 2B11; eBioscience). CD31 expression was directly coupled to PE and used at 1:100 (clone MEC 13.3; BD). Living cells were gated by propidium iodide dye exclusion (1 µg/ml). FACS analyses were performed on a FACSFortessa or FACSCalibur (BD) using BD FACS Diva v6.2 and CellQuest Pro software, respectively. Each FACS result is representative of at least three independent experiments.
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2

Targeted Microbubble Preparation and Conjugation

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Microbubbles were prepared in-house using previously described methods (Klibanov et al. 1999 ; Klibanov et al. 2006 ). Briefly, biotinylated MBs were formed by sonicating decafluorobutane gas (F2 Chemicals, Lancashire, UK) with a lipid micellar mixture of distearoyl phosphatidylcholine (Avanti Polar Lipids, Alabaster, AL, USA), polyethylene glycol stearate (Stepan Kessco, Elwood, IL, USA) and biotin-PEG3400-distearoylphosphatidylethanolamine (PEG-DSPE, Shearwater Polymers, Huntsville, AL, USA) in normal saline. After MBs were counted using a Coulter Multisizer 3 (Beckman Coulter, Brea, CA, USA) streptavidin (Anaspec Inc, Fremont, CA, USA) was added as a linking molecule at a concentration of 3 µg/10 million microbubbles (Lindner et al. 2001 ).
MBs were divided into two groups for conjugation to two types of antibodies. The first group was conjugated to biotinylated anti-mouse vascular endothelial growth factor receptor 2 (VEGFR2) antibody (clone Avas 12a1, eBioscience, San Diego, CA, USA) (Lee et al. 2008 ; Pochon et al. 2010 ; Willmann et al. 2008c (link); Willmann et al. 2008a (link)) and the second group was conjugated to biotinylated isotype control antibody (clone R35–95, BD Pharmingen, San Diego, CA, USA). All MBs were conjugated within 48 hours before use. Prior to each experiment, MB concentration was measured using a Coulter Multisizer 3.
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3

Targeted Microbubble Synthesis for Tumor Vascular Imaging

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Microbubbles were prepared using previously described methods (Klibanov et al. 1999 ; Klibanov et al. 2006 (link)). Briefly, decafluorobutane gas (F2 Chemicals, Lancashire, UK) was sonicated with a lipid micellar mixture of distearoyl phosphatidylcholine (Avanti Polar Lipids, Alabaster, AL, USA), biotin-PEG3400-distearoylphosphatidylethanolamine (PEG-DSPE, Shearwater Polymers, Huntsville, AL, USA) and polyethylene glycol stearate (Stepan Kessco, Elwood, IL, USA) in normal saline. A Coulter Multisizer 3 (Beckman Coulter, Brea, CA, USA) was used to count MBs before adding a streptavidin (Anaspec Inc, Fremont, CA, USA) linker at a concentration of 3 μg/10 million MBs (Lindner et al. 2001 ). MBs were conjugated to targeting antibodies within 48 hours before experimentation. To target angiogenic sites on the tumor vasculature, MBs were conjugated to biotinylated anti-mouse vascular endothelial growth factor receptor 2 (VEGFR2) antibody (clone Avas 12a1, eBioscience, San Diego, CA, USA) (Lee et al. 2008 ; Pochon et al. 2010 ; Willmann et al. 2008b (link)). A control group of MBs was conjugated to biotinylated isotype control antibody (clone R35–95, BD Pharmingen, San Diego, CA, USA). Prior to each use, a final measurement of MB concentrations was obtained. MB size ranged between 1 and 3 μm with a typical MB diameter of approximately 2 μm.
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