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8 protocols using diisopropylethylamine

1

Solid Phase Peptide Synthesis Protocol

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All Fmoc-protected amino acids, the activating reagent 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU), and Rink-Amide AM Resin (200–400 nm mesh) used for the manual solid phase peptide synthesis were purchased from Nova-Biochem. Dimethyl formamide (DMF), acetonitrile, diisopropyl ethyl amine, trifluoro acetic acid, and bacteria broth were purchased from Fisher Scientific to the purest quality and used without further purification. Bacteria were supplied by Rhodes College Department of Biology collection.
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2

Peptide Synthesis and Purification Protocol

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Gold(III) chloride trihydrate, cetyltrimethylammonium bromide (CTAB), hydroquinone, sodium borohydride, silver nitrate, trifluoroacetic acid (TFA), 2,2′-(ethylenedioxy)diethanethiol, thioanisole (EODT), anisole, piperidine, trypsin from porcine pancreas (T4799), and bovine pancreatic trypsin inhibitor (BPTI) were purchased from Sigma-Aldrich. Fmoc-amino acids, Fmoc-Gly-Wang resin, and HBTU were received from Aapptec (Louisville, KY, USA). Diisopropylethylamine and ethyl ether anhydrous were purchased from Fisher Scientific. GCKGCG, GGKGGG, and GGKGCG were either purchased from Genscript Inc. (New Jersey, USA) or synthesized. Pooled human urine was collected from Innovative research (Novi, MI).
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3

Amino Acid Extraction and Synthesis

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Acetonitrile, methanol, formic acid and trifluoroacetic acid (ULC/MS grade) were obtained from Biosolve (Valkenswaard, the Netherlands). Dichloromethane and di-isopropylethylamine were purchased from Fisher Bioreagents (Basel, Switzerland). The amino acids used for peptide synthesis were purchased from Novabiochem (Nottingham, UK).
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4

Epsilon-poly-l-lysine Functionalization Protocol

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Epsilon-poly-l-lysine (EPL; MW ~4000) was supplied by Wilshire Tech Inc. (Princeton, NJ). Succinic anhydride (SA), dipyrrolidino(N-succinimidyloxy)carbenium hexafluorophosphate (HSPyU), 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methyl-morpholinium chloride (DMTMM), deferoxamine mesylate (DFO), bovine serum albumin (BSA), diisopropylethylamine (DIEA), ninhydrin, sodium acetate, sodium hydroxide (NaOH), mercaptoacetic acid, bathophenanthrolinedisulfonic acid (BPS), ferric chloride, trichloroacetic acid (TCA), conc-HCl (12.1 M), acetone, ethyl acetate (EA), and ethanol (EtOH) were purchased from Fisher Scientific (Pittsburgh, PA), Sigma-Aldrich (Saint Louis, MO), or Acros Organics (Morris Plains, NJ), and used without further purification.
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5

Characterizing Small Molecule Interactions

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The following chemicals were purchased from the following vendors: Sigma-Aldrich: sodium/potassium ATPase inhibitor ouabain, artemisinin, atovaquone, 4-(chlorosulphonyl)phenyl isocyanate, 4-nitro-sulphonyl-4-aniline and acetonitrile. Fisher Scientific: isopropanol, dimethylacetamide, dichloromethane, dimethylformamide, diisopropylethylamine, 3-nitrobenzamidine, 3-aminobenzamidine; tin(II) dichloride dihydrate, formic acid, acetonitrile, 4-trifluoromethylaniline, 3-chloroaniline, 2-bromoaniline, 2-aminobenzonitrile, 2-bromo-4,6-difluoroaniline, 3-tri-fluoromethyl-4-chloraniline, 3-trifluoromethylaniline, 2-bromo-4-trifluoromethylaniline, 3,6-bis-trifluoro-methylaniline, 2,4-di-bromoaniline, butylamine, benzyl-amine, adamantylamine, oxalamide and sulphamide. Acros Organics: 4-aminosulfonamide, 3-isocyanatobenzonitrile, n-butylpiperazine, 4-hydroxypiperidine, piperazine, silica gel, 4-(4-bromophenylsulfonyl)aniline, 4-(4-nitrophenylsulfonyl)aniline, 4-(4-chlorophenylsulfonyl)aniline and methyl sulfoxide-d6. Maybridge Chemical Comp. Ltd.: 1,1-dioxo-1H-benzothiophen-6-ylamine, 4-benzene-sulphonylphenylamine and 3H-benzimidazol-5-ylamine. Molecular Probes: Fluo-4-AM, Pluronic F-127 and Probenecid. The sarco/ER calcium ATPase inhibitor CPA was purchased from Calbiochem.
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6

Synthesis of Homocysteine-Containing Peptides

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All N-Fmoc- and orthogonally sidechain-protected amino acids, including Fmoc-S-acetamidomethyl-L-homocysteine, and peptide synthesis reagents were acquired from Chem-Impex Inc. (Wood Dale, IL, USA) and ChemPep. Fisher Scientific (Wellington, FL, USA) provided all of the solvents used, and Sigma-Aldrich (St. Louis, MO, USA) provided the riisopropylsilane (TIPS). Alfa Aesar (Ward Hill, MA, USA) provided the diisopropylethylamine (DIEA) along with the metal salts used in the experiment described. Trifluoroacetic acid (TFA) was purchased from Acros Organics (Fair Lawn, NJ, USA). The Rink Amide resin was bought from Gyros Protein Technologies (Uppsala, Sweden). Acridine orange nonyl bromide was purchased from Thermo Fisher (Eugene, OR, USA). Dialysis cassettes (2000 Da MW cutoff) were purchased from Thermo Fisher.
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7

Solid Phase Peptide Synthesis Using Rink Amide Resin

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The Rink Amide ChemMatrix resin, used in solid phase peptide synthesis, was commercially obtained from Pcas-Biomatrix Inc. (Quebec, QC, Canada). Fmoc-protected amino acids and O-benzotriazole-N,N,N′,N′-tetramethyluraniumhexafluorophosphate (HBTU) were purchased from AAPPTec (Louisville, KY, USA), ChemPep, Inc. (Wellington, FL, USA), and Chem-Impex International (Wood Dale, IL, USA). Piperidine and diisopropylethylamine (DIEA) were procured from Alfa Aesar (Ward Hill, MA, USA). Acetonitrile, triisopropylsilane (TIPS), trifluoroacetic acid (TFA), and cobalt (II) chloride hexahydrate were all obtained from Sigma Aldrich (St. Louis, MO, USA). N,N-dimethylformamide (DMF), dichloromethane (DCM), and methanol (MeOH) were purchased from AVANTOR (Center Valley, PA, USA) and Fisher Scientific (Pittsburgh, PA, USA). Ethylenediaminetetraacetic acid disodium salt (EDTA) was purchased from Mallinckrodt JT Baker (Hazelwood, MO, USA). Scanning electron microscopy (SEM) stubs, round glass coverslips, and transmission electron microscopy (TEM) grids were obtained from Ted Pella, Inc. (Redding, CA, USA).
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8

Synthesis of Homocysteine-Containing Peptides

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All N-Fmoc- and orthogonally sidechain-protected amino acids, including Fmoc-S-acetamidomethyl-L-homocysteine, and peptide synthesis reagents were acquired from Chem-Impex Inc. (Wood Dale, IL, USA) and ChemPep. Fisher Scientific (Wellington, FL, USA) provided all of the solvents used, and Sigma-Aldrich (St. Louis, MO, USA) provided the riisopropylsilane (TIPS). Alfa Aesar (Ward Hill, MA, USA) provided the diisopropylethylamine (DIEA) along with the metal salts used in the experiment described. Trifluoroacetic acid (TFA) was purchased from Acros Organics (Fair Lawn, NJ, USA). The Rink Amide resin was bought from Gyros Protein Technologies (Uppsala, Sweden). Acridine orange nonyl bromide was purchased from Thermo Fisher (Eugene, OR, USA). Dialysis cassettes (2000 Da MW cutoff) were purchased from Thermo Fisher.
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