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Xf plasmamembrane permeabilizer xf pmp

Manufactured by Agilent Technologies

The XF PlasmaMembrane Permeabilizer (XF PMP) is a laboratory instrument designed to facilitate the study of cellular processes by temporarily permeabilizing the cell membrane. It allows for the controlled introduction of specific molecules or compounds into the intracellular environment of cells, enabling researchers to investigate various cellular functions and responses.

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5 protocols using xf plasmamembrane permeabilizer xf pmp

1

Evaluating Hepatocyte Fatty Acid Oxidation

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Primary hepatocytes from flox or LTKO mice were used for assay after
16 h incubation with serum free William’s medium E. 3 nM of XF Plasma
Membrane Permeabilizer (XF PMP) (Agilent Technologies) and 4 mM ADP
contained MAS buffer was used for base media. 1 mM malate, 5 mM ATP, 1 mM
carnitine, 8 mM MgCl2, 0.3 % fatty acid free BSA /100 μM
palmitate/0.4 μCi [1-14C] palmitate with or without 0.5 mM
of CoA were treated as substrates. After 30 min incubation at 37 °C,
we performed same steps for fatty acid oxidation assay as we previously
described.
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2

Permeabilization of Plasma Membranes

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Recombinant, mutant perfringolysin O (rPFO) was obtained from Agilent Technologies (XF Plasma Membrane Permeabilizer, XF PMP) and kept as a frozen stock at −20°C. Alamethicin was purchased from Enzo Life Sciences and kept as a 20 mg/mL stock solution in ethanol at −20°C. All other reagents were purchased from Sigma unless otherwise specified.
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3

Selective Plasma Membrane Permeabilization for Mitochondrial Respiration Analysis

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Recombinant, mutant perfringolysin O (rPFO; commercially XF Plasma Membrane Permeabilizer [XF PMP, Agilent Technologies]) was used to selectively permeabilize the plasma membrane of BMDMs. Experiments were conducted as previously described57 ,58 (link). Immediately prior to assay, cell media was replaced with MAS buffer (70 mM sucrose, 220 mM mannitol, 10 mM KH2PO4, 5 mM MgCl2, 2 mM Hepes, and 1 mM EGTA; pH 7.2) containing 3 nM rPFO, respiratory substrates, and 4 mM ADP. The ADP-stimulated respiration rate (referred to as ‘State 3’ respiration) was measured, and rates were subsequently measured in response to 0.2 μM rotenone with 1 μM antimycin A. Substrate concentrations were as follows: Glutamate/Malate, 5 mM glutamate with 5 mM malate; Pyruvate/Malate, 5 mM pyruvate with 1 mM malate; Succinate/Rotenone, 5 mM succinate with 2 μM rotenone; Citrate, 5 mM citrate.
When permeabilized cells were treated with alamethicin to form pores of 3–6 kDa in the mitochondrial inner membrane (“double-permeabilized” cells) and complex I-mediated respiration was directly assessed, 10 μg/mL alamethicin was added at 37°C 15 minutes prior to measurements58 (link). Double-permeabilized cells were offered 10 μM cytochrome c in the experimental medium and either 10 mM NADH or 10 mM succinate with 2 μM rotenone to drive respiration.
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4

Comprehensive Antibody Validation Protocol

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The following antibodies were used for immunoblotting (IB) and immunofluorescence (IF): β-ACTIN (IB, Sigma-Aldrich, A5441, 1:10,000); GFP (IB, Cell Signaling, 2956, 1:1,000); HA (IB, IF, BioLegend, 901513, 1:2,000 (IB), 1:1,000 (IF)); MAP1LC3B (IB, Novus, NB100–2220, 1:3,000; IF, Cell Signaling, 3868, 1:200); p62 (IB; American Research Products, 03-GP62-C, 1:4,000); TSG101 (IB, Abcam, ab83, 1:1,000); VPS28 (IB, Santa Cruz Biotechnology, sc-166537, 1:100). ON-TARGETplus SMART Pool Non-targeting (D-001810–10) and CHMP2A (L-020247–01) siRNAs were obatined from GE Healthcare Dharmacon. pCDH1-CMV-HA-VPS28(WT)-SV40-hygro and pCDH1-CMV-HA-VPS28(TM[K54D, K58D, D59A])-SV40-hygro were generated using Gibson Assembly. All other reagents were obtained from the following sources: Bafilomycin A1 (LC Laboratories, B-1080); Hoechst 33342 (Invitrogen, NucBlue, R37605); Membrane-impermeable HaloTag Ligand (MIL) (Promega, Alexa Fluor 488-conjugated, G1001); Membrane-permeable HaloTag Ligand (MPL) (Promega, tetramethylrhodamine-conjugated, G8251); normal goat serum (Sigma-Aldrich, G9023); Nucleofector Kit V (Lonza, VCA-1003); paraformaldehyde (Electron Microscopy Sciences, 15710); XF Plasma Membrane Permeabilizer (XF-PMP) (Seahorse Bioscience, 102504–100).
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5

Comprehensive Antibody Validation Protocol

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The following antibodies were used for immunoblotting (IB) and immunofluorescence (IF): β-ACTIN (IB, Sigma-Aldrich, A5441, 1:10,000); GFP (IB, Cell Signaling, 2956, 1:1,000); HA (IB, IF, BioLegend, 901513, 1:2,000 (IB), 1:1,000 (IF)); MAP1LC3B (IB, Novus, NB100–2220, 1:3,000; IF, Cell Signaling, 3868, 1:200); p62 (IB; American Research Products, 03-GP62-C, 1:4,000); TSG101 (IB, Abcam, ab83, 1:1,000); VPS28 (IB, Santa Cruz Biotechnology, sc-166537, 1:100). ON-TARGETplus SMART Pool Non-targeting (D-001810–10) and CHMP2A (L-020247–01) siRNAs were obatined from GE Healthcare Dharmacon. pCDH1-CMV-HA-VPS28(WT)-SV40-hygro and pCDH1-CMV-HA-VPS28(TM[K54D, K58D, D59A])-SV40-hygro were generated using Gibson Assembly. All other reagents were obtained from the following sources: Bafilomycin A1 (LC Laboratories, B-1080); Hoechst 33342 (Invitrogen, NucBlue, R37605); Membrane-impermeable HaloTag Ligand (MIL) (Promega, Alexa Fluor 488-conjugated, G1001); Membrane-permeable HaloTag Ligand (MPL) (Promega, tetramethylrhodamine-conjugated, G8251); normal goat serum (Sigma-Aldrich, G9023); Nucleofector Kit V (Lonza, VCA-1003); paraformaldehyde (Electron Microscopy Sciences, 15710); XF Plasma Membrane Permeabilizer (XF-PMP) (Seahorse Bioscience, 102504–100).
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