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Biotin pe

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Biotin-PE is a fluorescent labeling reagent used in flow cytometry applications. It consists of the biotin molecule conjugated to the fluorescent dye phycoerythrin (PE). Biotin-PE can be used to detect and quantify biotin-labeled cells or biomolecules.

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2 protocols using biotin pe

1

Preparation and Functionalization of Liposomes

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To prepare the liposome, the detergent remove method was used. Cholesterol (Sigma Aldrich, USA), L-alpha phosphatidylcholine (PC) (Sigma Aldrich, USA), biotinyl phosphoethanolamine (biotin-PE) (Avanti Polar Lipids, USA), and Ni-NTA-DGS (Avanti Polar Lipids, USA) were first dissolved in 60 ˚C N-Octylglucoside (Sigma Aldrich, USA) solution to make lipid stock solutions. The liposome for the experiment was generated by mixing the lipids with a ratio of PC: Cholesterol: Ni-NTA-DGS: biotin-PE = 16:2:2:1, to achieve a total lipid concentration of 800 mM. After mixing, 540 ul Tris-buffered saline (0.01 M, pH 7.4, 150 mM NaCl) was added to the mix and followed by eliminating N-Octylglucoside with the Pierson detergent removal column (Thermo Fisher, USA). Then, the detergent-free lipid mix was vortex and extruded through 0.2 μm syringe filter at 60 ˚C for 15 times to construct the liposome with unified size.
To functionalize the liposomes, the His-tagged human recombinant E-selectin (10335-H03H, Sino Biological, USA) was used. 45 μl of 0.58 μM E-selectin solution was added to the liposome solution. To collect the E-selectin conjugated liposome, the solution was centrifuged at 100,000xg for 3 hours at 4 °C. After the centrifuge, the supernatant was removed, and the pellet was resuspended in 100 μl Tris-buffered saline. The liposome samples were stored at 4 °C and used within 24 hours.
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2

Alanine-Scan RBD Mutant Multiplex Assays

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The alanine-scan RBD mutant multiplex assays were performed using an established technique (Lopez et al., 2021 (link)). In brief, RBD proteins for the alanine scan were produced by Genscript, whereas RBD and ACE2 proteins from the variant arrays were produced in house as above. RBD proteins were coupled to magnetic beads (Bio-Rad). For ACE2 inhibition assay, RBD-coupled beads were pooled and incubated with biotinylated ACE2 in the presence of titrating quantities of nanobody-Fc proteins. ACE2 binding was detected with Streptavidin-PE (Thermo Fisher Scientific), followed by Biotin-PE (Thermo Fisher Scientific). After washing, beads were analysed using FLEXMAP 3D (Luminex corporation). IgG binding was performed similarly; Pooled beads were incubated with titrated quantities of nanobody-Fc proteins and detected using anti-human IgG-PE (Southern Biotech). For analysis, a single dose (non-saturating for WT RBD) of nanobody was chosen to compare for all variants. For the ala-scan, only proteins of high purity (based on SDS-PAGE gel analysis) were used (Table S1) and the full list of variants used in the variant array are depicted in Figure 5C.
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