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6 protocols using pcmv n flag vector

1

Overexpression of RBM5 via miR-483-5p

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MiR-483-5p mimics and the miR-483-5p inhibitor were purchased from Sigma-Aldrich. We used mirVana miRNA mimic or mirVana miRNA inhibitor (Ambion, Austin, TX, USA) for the negative control. Furthermore, a RBM5 expression vector was generated into a pCMV-N-FLAG vector (Beyotime, Jiangsu, China) and pCMV-N-FLAG vector for the negative control. Cells were allowed to reach 70% to 80% confluence in 6-well plates before transfection. Cells were transfected using Lipofectamine2000 according to the manufacturer's instructions. After 48 hours of transfection, the cells were harvested for further study.
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2

Regulation of FGFR1 by miR-573

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Indicated siRNA, vectors and miR-573 mimics/antagomir transfections were carried out using Lipofectamine 2000 according to the manufacturer's protocol and each sequence is listed in Supplementary Table 1. Non-specific negative control siRNAs were also used (sense strand: 5′-UUCUCCGAACGUGUCACG-3′; anti-sense strand: 5′-ACGUGACACGUUCGGAGAATT-3′). The mock group was defined as the one supplemented with the transfection reagent only.
The wild-type and mutants FGFR1 3′-UTR were generated on the miR-573 target recognition sites (seed sequences) as shown in Supplementary Table S1. Both the wild-type and mutated 3′-UTRs of FGFR1 gene were cloned into the pmirGLO dual luciferase reporter vector using Sac I and Xba I restriction sites. Furthermore, a GATA3 expression vector was generated into a pCMV-N-flag vector (Beyotime, Jiangsu, China) using ECoR I and Xba I restriction sites. A 2,000-bp fragment of the miR-573 promoter region was PCR amplified from the genomic DNA of HEK293T cell line using primers in Supplementary Table S2. The PCR product was cloned into a pGL3 luciferase reporter (Promega Corp, Madison, WI, USA) and the resulting vector was named miR573-pGL3-pro. FGFR1 expression vector was bought from Addgene company and all these vector products were validated by sequencing.
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3

Cloning and Mutagenesis of PIM1 and RUNX3

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The complete PIM1 protein coding sequence (NCBI reference sequence NM_001243186.1) was subcloned into the pCMV‐N‐myc vector (Beyotime, China). The complete RUNX3 cDNA sequence (NCBI reference sequence NM_004350.2) was subcloned into the pCMV‐N‐FLAG vector (Beyotime, China). A mutant RUNX3(RUNX3(4A)) construct was generated by introducing site‐specific mutations into the complete RUNX3 coding sequence (pCMV‐N‐FLAG vector), by substituting Ser149, Thr151, Thr153 and Thr155 into alanine, under the guidance of PCR‐based site‐directed mutagenesis kit (Vazyme, China).
Primers to generate coding sequence of PIM1:

Forward primer, 5′‐CCCAAGCTTATGCTCTTGTCCAAAATCAACTCGC‐3′,

Reversed primer, 5′‐CGGAATTCCTATTTGCTGGGCCCCGGC‐3′;

Primers to generate coding sequence of RUNX3:

Forward primer, 5′‐CCCAAGCTTATGCGTATTCCCGTAGACCCAAG‐3′,

Reversed primer, 5′‐CGGAATTCTCAGTAGGGCCGCCACACG‐3′;

Primers to generate RUNX3 (4A) were designed following the instruction:

Forward primer, 5′‐GGCTTTCGCCCTGGCCATCGCTGTGTTCACCAACCCCACCCAA‐3′, reversed primer, 5′‐GCGATGGCCAGGGCGAAAGCCTTCCCTCGCCCACTGCGG‐3′.

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4

Cloning and Characterization of Sox14a and Sox14b in E. sinensis

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Full-length Sox14a and Sox14b were cloned from Eriocheir sinensis cDNA using Prime STAR HS DNA polymerase (Takara), and then cloned into pCMV-N-Flag vector (EcoR I and Xho I sites; Beyotime). Thereafter, EGFP and RFP were also cloned into pCMV-N-Flag-Sox14a and pCMV-N-Flag-Sox14b vectors, respectively (Xho I and Xba I sites; Beyotime).
N-terminal half (corresponding to amino acid 1-46, 1-34 of SOX14A and SOX14B, respectively), C-terminal half (corresponding to amino acid 125-423, 124-397), the HMG box (corresponding to amino acid 47-124, 35-123) and deletion of the HMG box (corresponding to amino acid 1-46 and 125-423, 1-34 and 124-397) of E. sinensis SOX14A and SOX14B sequences were designated as SOX14A and SOX14B deletion mutants (SOX14A/B ΔN, ΔC, HMG, ΔHMG), respectively. SOX14A/B deletion mutants (SOX14A/B ΔN, ΔC, HMG, ΔHMG) were individually generated by PCR-based cloning of the corresponding fragments. They were then tagged with EGFP/RFP epitope by cloning into pCMV-N-Flag vector. All the PCR primers used are listed in Supplementay Table 1.
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5

Plasmid Construction and Cell Transfection

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Full-length MICALL2 was PCR-amplified from the pCMV-SPORT6-MICAL-L2 plasmid (YouBio, Hunan, China) and cloned into the pCMV-C-HA or pEGFP-N1 vector (Beyotime, Nantong, China) as previously described (Min et al., 2019 (link)). For plasmid construction, the cDNA of the c-Myc gene was amplified by PCR from NCI-H1299 cells and inserted into the pCMV-N-Flag vector (Beyotime). All the constructs were verified by sequencing. When the cells had reached ~80% confluence, they were transfected with the relevant plasmids using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions.
siRNAs targeting MICAL-L2 were purchased from China GenePharma Co., and contained the following sequences: siMICAL-L2 #1, 5′-GGUUCCCACAAAGAGUAUATT-3′; siMICAL-L2 #2, 5′-CUCGACGUUUGUGACAACUTT-3′; siMICAL-L2 #3, 5′-CCAAGUUCCGCUUGUCCAATT-3′. The cells were transfected with MICAL-L2 siRNA or control siRNA using Lipofectamine 2000 at 80% confluence.
The transfected cells were treated with cycloheximide (CHX) (Sigma-Aldrich, Saint Louis, MO, USA), MG-132 (Selleck Chemicals, Houston, TX. USA), Velcade (Selleck Chemicals), acadesine (AICAR; Selleck Chemicals), or chloroquine diphosphate (Chlq; MedChemExpress, Monmouth, Junction, NJ, USA) at the indicated time points.
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6

Characterization of CSF1 3'UTR interactions

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The 3′-UTR of CSF1 was amplified and subcloned into the pMIR-Report luciferase vector (Ambion, Austin, TX, USA). Mutants of the seed region of the putative miRNA-binding sites in 3′-UTR were generated by point mutation PCR. The CDS and CDS plus 3′UTR of CSF1 were obtained by PCR from CSF1 plasmid (Origene, Rockville, MD, USA) and subcloned into the pCMV-N-Flag vector (Beyotime Biotechnology, Jiangsu, China).
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