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Collagenase type 4

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Collagenase type IV is an enzyme used for the dissociation and isolation of cells from various tissues. It acts by hydrolyzing the peptide bonds in collagen, a major structural component of the extracellular matrix.

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885 protocols using collagenase type 4

1

Isolation and Culture of Mouse Hepatocytes

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Hepatocytes were isolated from mouse livers by a collagenase perfusion technique. In brief, after the left ventricle was cannulated and right atrium was cut, the liver was perfused with 20 ml PBS followed by 30 ml HBSS (without Mg2+ or Ca2+) supplemented with 0.2 mM EDTA at 10 ml min−1 speed through the left ventricle. Next, the liver was perfused with 20 ml collagenase type IV (Sigma Aldrich) containing medium (0.5 mg/ml collagenase type IV in DMEM supplemented with 5 mM HEPES, Penicillin/Streptomycin). The liver was dissociated and the liver suspension was passed through a 70 μm sterile filter. The hepatocytes were separated from non-parenchymal cells by low-speed centrifugation (50xg for 5 min). The hepatocytes were further purified using Percoll gradient separation. The living hepatocytes were counted using Trypan blue and cultured on collagen-coated plate having DMEM medium supplemented with 10% FBS, 1x Penicillin/Streptomycin, 1x Insulin (sigma), and EGF (40 ng/ml). For priming, hepatocytes were cultured in collagen-coated 6- or 12-well cell culture plates overnight and stimulated with TLR ligands: ultrapure Escherichia coli-derived LPS (Invivogen), PGN (Invivogen), IL-6 (Peprotech), or TNFα (Peprotech).
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2

Isolation of Immune Cells from Murine Tissues

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Mice were sacrificed by CO2 inhalation, transcardiac perfusion was performed with PBS prior to collection of skin, liver, lung, kidney, and spleen. Liver, lung, kidney, and spleen were digested with Collagenase Type IV (0.4 mg/mL; from Clostridium histolyticum, Sigma Aldrich) in HBSS (Sigma Aldrich) containing 10% FCS for 45 min at 37°C; skin was digested with Collagenase Type IV (1 mg/mL; from Clostridium histolyticum, Sigma-Aldrich) and DNase (0.1 mg/ml, Sigma-Aldrich) in RPMI (Thermo Fisher Scientific) containing 5% FCS (Brunschwig) for 90 min at 37°C. The samples were homogenized using an 18 gauge needle and the homogenate filtered through a 70 μm cell strainer. For liver homogenates, digestion/homogenization was followed by a gradient centrifugation with 30% Percoll (GE Healthcare Life Sciences) in PBS (23,500 × g for 30 min at 4°C without brakes). For liver, lung, kidney, and spleen, erythrocyte lysis was performed using ammonium-chloride-potassium (ACK) buffer (150 mM NH4Cl, 10 mM KHCO3, 0.1 mM Na2EDTA). The samples were then stained with fluorescence cytometry antibodies.
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3

Isolation of Bovine Gonocytes

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Testes were collected from 0 to 10-day-old Holstein bull calves in Dulbecco's modified Eagle's medium and Ham's F12 (DMEM/F12; GIBCOBRL Invitrogen, Carlsbad, CA, USA) supplemented with 15 mM HEPES (Wako Pure Chemical, Tokyo, Japan) and were transported to the laboratory on ice within 24 hours.
Gonocytes were isolated by a three-step enzymatic digestion method as described previously (Kim et al. 2014 (link)) with minor modifications. Briefly, the testes were encapsulated, minced and digested with collagenase Type IV (1 mg/ml; Sigma-Aldrich, St. Louis, MO, USA) at 37 °C for 45 min with constant agitation. After three washes, tissue fragments of the seminiferous tubules were incubated with collagenase Type IV and hyaluronidase (Sigma-Aldrich), each at a final concentration of 1 mg/ml. The cell suspension was further incubated with a mixture of 0.25% trypsin (Nacalai-Tesque, Kyoto, Japan) and DNase I (7 mg/ml; Sigma-Aldrich) for 10 min. After centrifugation, the pellet was suspended in DMEM/F12 medium containing 10% FBS to stop enzymatic activity of trypsin. The cell suspension was filtered through 40 μm nylon mesh (Kyoshin Rikou, Tokyo, Japan) and suspended in DMEM/F12 medium containing 5 % FBS.
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4

Isolation and Culture of Primary Osteoblasts

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Primary osteoblasts were isolated from calvariae of 2‐ to 4‐day‐old WT and Mmp3 KO mouse pups. Briefly, calvariae were digested for 15 min with 0.2% type IV collagenase (Sigma‐Aldrich) in phosphate‐buffered saline (PBS) with EDTA in order to remove fibroblasts, and then for 45 minutes with 0.2% type IV collagenase in PBS for osteoblastic cells release. The osteoblastic cells were expanded for 5–6 days in minimum essential medium‐alpha containing 10% fetal calf serum and plated at a density of 2.5 × 10+4 cells/cm2. For the determination of alkaline phosphatase activity, cells were plated at 4 × 10+4 cells per well in 24‐well plates. For RNA extraction and the evaluation of mineralization, cells were plated at 2 × 10+5 cells per well in 6‐well plates. The culture medium was supplemented with 50 μM ascorbic acid and 10 mM beta‐glycerophosphate, which was replaced every 2–3 days. Nodules of mineralized extracellular matrix were labeled by Alizarin red staining (Sigma‐Aldrich) following fixation of the cells with paraformaldehyde 4% 15 min at 4°C. The mineralized nodules were then quantified by a colorimetric assay adapted from Wu et al.37 The stained cells were incubated with a 10% acetic acid solution for 30 min with agitation to elute all calcium‐bound stain. Optical density of the resulting solution was measured at 450 nm.
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5

Porcine Testicular Cell Isolation

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Single-cell suspensions were prepared from testes from 1-, 4-, 10-, and 14-week-old pigs by a sequential enzymatic digestion protocol (Honaramooz et al., 2002 (link)). Briefly, the tunica albuginea and visible connective tissue were dissected and removed. The exposed seminiferous tubules were dissociated with Type IV collagenase (2 mg/ml; Sigma, Millipore-Sigma, Oakville, ON, Canada) in Dulbecco modified Eagle medium (DMEM, Sigma) at 37 °C for 20–40 min with occasional agitation, followed by incubation at 37 °C for 30 min in DMEM with Type IV collagenase (2 mg/ml; Sigma) and hyaluronidase (1 mg/ml; Sigma). The digested tubules were rinsed three times in Dulbecco phosphate-buffered saline (DPBS, Ca2+and Mg2+ free) and further digested with 0.125% (w/v) trypsin and 0.5 mM ethyl-enediaminetetra-acetic acid (EDTA) at 37°C for 15–20 min. DNase I (7 mg/ml in DMEM; Sigma) was added during the digestion process as needed. After trypsin digestion, the cell suspension was filtered through 70 µm and 40 µm cell strainers sequentially (BD Biosciences, Oakville, ON, Canada). The single cells were then collected by centrifugation at 500g for 5 min at room temperature (RT) and the cell pellet was resuspended in DMEM/F-12 (Sigma) with 5% fetal bovine serum (FBS) for differential plating.
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6

Isolation and Culture of Sheep Endometrial Epithelial Cells

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To further investigate the effect of elevated LPS concentrations during SARA on the endometrial epithelium TJs, the sheep uterus of the LC group was collected and primary endometrial epithelial cells were cultured [55 (link)]. Antibiotics (50 IU/mL penicillin and 50 IU/mL streptomycin; Solarbio) at 37 °C in PBS and 75% alcohol were used to sequentially wash the endometrial tissue thrice, and the endometrial epithelium was cut with 0.2% collagenase type 4 (Sigma-Aldrich, St. Louis, MO, USA) at 37 °C for 10 min. Centrifugation was performed at 1200 rpm for 5 min to remove the supernatant, followed by washing with PBS thrice. The cells were then cultured in Dulbecco’s modified Eagle medium (DMEM)/F12 complete medium suspension containing 100 IU/mL penicillin (Solarbio), 100 IU/mL streptomycin (Solarbio), and 10% fetal bovine serum at 37 °C with 95% O2 and 5% CO2 in a humidified incubator. The medium was changed every 2 d, and the cells were split upon reaching 80–90% confluency and cultured in six-well plates (Corning, Glendale, AR, USA), which contained 2 mL of medium. During treatment, DMEM/F12 was added to the original culture for 12 h and was used to treat according to the test needs for 24 h, after which the supernatant was discarded, and the cells were washed with PBS precooled at 4 °C three times and stored at −80 °C until use.
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7

Isolation of Primary Hepatocytes from Mice

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Primary hepatocytes were isolated from 6–8-week-old C57BL/6 mice (Charles River Laboratories, Wilmington, MA, USA) as described previously27 (link). Briefly, after the abdomen was opened, the intestines were displaced to the left, and the portal vein was exposed. The chest was opened, and the hepatic vein was cannulated in a retrograde fashion via an incision in the right atrium with a 24-gauge needle connected to a variable-speed pump that delivered perfusion solution 1 (142 mM NaCl, 6.7 mM KCl, and 10 mM HEPES) at a rate of 8 mL/min. The hepatic portal vein was cut to allow the perfusion fluid to escape. After 2 min, perfusion solution 1 was switched to perfusion solution 2 (66.7 mM NaCl, 6.7 mM KCl, 100 mM HEPES, and 4.8 mM CaCl2·2H2O) containing 25 mg of collagenase type 4 (Sigma) and 2% bovine serum albumin (BSA) in 50 mL, and the perfusion was continued for another 2–3 min at the same rate. Perfused liver was then excised and transferred to a 60-mm culture dish containing the primary cell culture medium. The liver was broken apart gently with forceps. Cells were counted and plated in medium 199 (Sigma) supplemented with 10% fetal bovine serum (FBS), 1 U/mL penicillin, 1 µg/mL streptomycin, 10 nM dexamethasone, and 23 mM HEPES. The cells were incubated at 37 °C in a 5% carbon dioxide (CO2) atmosphere.
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8

Isolation of Chicken Lymphocytes

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Five days before infection, each time point after infection, 5 d before immunization, and each time point after immunization, heparinized blood samples from individual chickens were collected to isolate peripheral blood lymphocytes (PBL) as previously described (Dai et al., 2020 ). Single cell suspensions of lung were obtained in RPMI 1640 medium (Gibco, Carlsbad, CA) according to the manufacturer's instructions of tissue mononuclear cell kit (Haoyang, Tianjin, China). Briefly, Dice lung lobes into slurry in petri dish using curved scissors while immersed in digestion media containing 0.002% DNase I (Sigma-Aldrich, St. Louis, MO) and 0.1% Collagenase Type 4 (Sigma-Aldrich) for 20 min at 37°C. Filter digested tissue through 190 μM metal mesh and then isolated lymphocytes with the tissue separation medium in the kit, as described before (Dai et al., 2020 ). Cell viability and counting was performed using Trypan Blue and a Neubauer hemocytometer (Sigma-Aldrich). And, the chicken PBL and tissue single cell suspensions were frozen in liquid nitrogen for later study.
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9

Comprehensive Immune Profiling of Murine Tissues

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Blood was collected weekly to assess T cell phenotype and absolute count. On day 42 prior to organ harvest, mice were intravenously injected with 1.5µg of anti-CD4-BV650 and anti-CD8a-BV650 antibody 2 minutes before euthanasia to label circulating blood cells. The spleen, axillary lymph nodes, bone marrow, kidneys, liver, lungs, and blood were then procured. Kidney and lung samples were chopped and digested for 30 minutes at 37˚C with 2mg/ml Collagenase (type 4, Sigma-Aldrich) and 50µg/ml DNAse (ThermoFisher) in HBSS. Digested lungs were then homogenized, filtered, and washed in FACS buffer (PBS with 2% FBS). Livers were homogenized manually, filtered through 40μm strainers, and spun lightly at 300rpm to pellet the hepatocytes. The liver supernatant and digested kidneys were resuspended in a 40% Percoll solution, overlaid on 70% Percoll, and spun at 2000rpm for 20 minutes with the brake off. The buffy coats were isolated and washed in FACS buffer. Bone marrow from tibia and fibula were flushed with a 21-gauge needle using PBS and homogenized into single cell suspensions. Spleens and lymph nodes were processed into single cell suspensions, and blood, spleen, and bone marrow were lysed with Fixative-Free Lysing Solution following manufacturer’s instructions (Invitrogen). Each tissue was then washed in FACS buffer and stained with antibodies for flow cytometry.
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10

Isolation of Lung and Immune Cells

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Mice were sacrificed by CO2 asphyxiation and tissues removed aseptically. Mice were injected i.v 3 min prior to euthanasia with anti-CD45-APCCy7 (5 μg; BD Biosciences, CA) to distinguish labeled vascular leukocytes from unlabeled lung parenchymal cells (29 (link)). BAL were obtained by inflating the lungs with 1 ml PBS and collecting the fluid to isolate the cells. The post-caval lung lobe was collected into 10% neutral buffered formalin, paraffin embedded and processed for hematoxylin and eosin staining using standard techniques. For isolation of lung leukocytes, lung tissue in complete RPMI media [L-glutamine and 25 mM Hepes (Invitrogen, CA), FCS (10% v/v), 2-mercaptoethanol (50 μM; Sigma, MO) and PenStrep (100 U/ml; Invitrogen)] was digested with collagenase type 4 (50 U/ml; Sigma) and DNAse I (13 μg/ml; Sigma) at 37°C for 45 min prior to homogenization and multiple filtration steps. Lymph nodes and spleens were filtered (70 μm) in complete RPMI and the leukocytes pelleted by centrifugation (500 g). Erythrocytes were removed by ACK lysis buffer.
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