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194 protocols using smz745t

1

Quantifying Planthoppers' Wing Morphology

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Wing length was measured using a C7 microscope eyepiece ocular micrometer (Shanghai Optics, Shanghai). Wings were examined under a dissection microscope (Nikon SMZ745T) at 3x magnification. Wing length was measured from midway along the vein to the distal end of the wing.
Whole brown planthoppers were imaged using a Nikon microscope (Nikon SMZ745T) with NIS-elements. The wing was removed from the thorax and mounted in euparal on a microscope slide and covered with a cover slip. Then the long wing was imaged with a Nikon microscope (AZ100, 2X) with NIS-elements; short wings were imaged with a Nikon microscope (Eclipse 80i, 4X) with NIS-elements. Images were processed with Adobe Photoshop CS5. Wing area was measured using NIH ImageJ software (NIH, Bethesda, MD, USA). Bristles were counted and recorded for each of the wing types.
Hierarchical Cluster analyses using SPSS 20.0 were used to contrast wing morphologies for natural and experimentally-induced long and short-winged forms. For cluster analysis, a between-group linkage method with Euclidean distance measures to discriminate clusters was used.
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2

NIR Irradiation Impacts on Fibroblast Viability

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500 μl of fibroblast suspension (1 × 104 cells mL−1) was seeded on different samples and cultured with or without NIR irradiation for 1, 3 and 7 days. At the prescribed time point, viability of cells was assessed by Alamar Blue (Sigma, USA) assay according to the instructions and the absorbance was measured by a Multiscan Spectrum (Multiskan FC, Thermo, America). The cell statuses were also evaluated by Live/dead viability/cytotoxicity kit (Invitrogen, France) after 1 and 3 days of incubation according to the User Instruction, and epifiuorescence images were obtained by an Olympus BX52 microscope (SMZ745T, Nikon, Japan). The cell morphologies on different samples after incubation for 1 day were also evaluated by fluorescence staining of actin cytoskeleton, focal adhesion, and nuclei according to the operation manual as detailed elsewhere [44 (link)] and observed by an epifiuorescence (SMZ745T, Nikon, Japan).
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3

Detailed Invertebrate Specimen Imaging

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The specimens were examined, measured, and photographed under a Nikon SMZ 745T trinocular stereo microscope equipped with a Canon EOS 5DS R digital SLR camera. Scanning electron micrographs (SEM) were taken with a JEOL, JSM-5410 LV microscope using gold-coated samples, and the material returned to alcohol upon examination. Digital images obtained were processed and edited with Adobe Photoshop CS5. Line drawings were executed based on photographs and specimens examined under a Nikon SMZ 745T trinocular stereo microscope, equipped with a Canon EOS 5DS R digital SLR camera. The terminology used and the carinotaxic formulae in the descriptions follow those in Golovatch et al. (2007a , 2007b , 2012a (link)), while body ring counts are after Enghoff et al. (1993) (link) and Golovatch et al. (2007a) .
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4

Microscopic Analysis of Fungal Rust Spores

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The specimens were observed under a stereomicroscope (Nikon SMZ745T, Nikon Corporation, Tokyo, Japan) and shot with a Canon digital camera (Canon EOS 1500D, Canon Inc., Tokyo, Japan) fitted on. Microscope images of the samples were taken by a Canon EOS 700D digital camera fitted on the Nikon ECLIPSE Ni compound microscope (Nikon, Japan). Measurements were taken with the Tarosoft (R) Image Frame Work (v.0.9.7). More than 30 morphological characteristics such as teliospores, urediniospores, and paraphyses were measured for each specimen. Photo plates were arranged by using Adobe Photoshop CS6 v. 13 (Adobe Systems Software Ireland Ltd, San Jose, USA). The different spore stages of rust fungi are designated by the following Roman numerals: spermogonia/spermatia (0), aecia/aeciospores (I), uredinia/urediniospores (II), telia/teliospores (III), and basidia/basidiospore (IV). We applied the definitions of spore stage based on Cummins and Hiratsuka [7 ], and followed morphological types of spermogonia designated by Hiratsuka and Hiratsuka [23 ].
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5

Stereomicroscopic Examination of Dental NCCLs

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To carry out this study, the NIKON SMZ 745T stereomicroscope (Nikon Corporation, Tokyo, Japan) was used at a maximum magnification of 75× and at a working distance of 115 mm (Figure 1). The device was used to examine dental surfaces with NCCLs and to acquire their 2D images, stored as TIFF, JPG and PNG files. The acquisition of 2D microscopic images, their storage and subsequent processing were carried out using NIS-A-AMEAS software (version 2021), the specific software platform for this imaging system. The successive acquisition of 2D images and their recomposition in order to obtain a 3D image of the examined dental surfaces were carried out with the help of NIS-A-EDF software [34 ].
In order to position the teeth for the stereomicroscopic examination, each tooth was fixed in silicone of increased consistency (Zetaplus L Intro KIT, Zhermack, Badia Polesine, Italy), leaving only the dental surface with the NCCL exposed for the examination. The stereomicroscopic examination was performed by a specialist of Engineering and Management of Technological Systems and a specialist of Biophysics. The interpretation and analysis of the obtained images were carried out by 2 specialists in the field of dental wear.
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6

Chick CAM Angiogenesis Assay

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Fertilized chick eggs were purchased by Granja Santa Isabel (Córdoba, Spain) and incubated for three days at 38 °C in a humidified incubator until they were windowed. Five days later, methylcellulose discs with several treatments were implanted on the CAM, and incubated for an additional 48 h. For methylcellulose disc preparation, compounds were resuspended in a 1.2% solution of methylcellulose, and 10 μL drops of this solution were allowed to dry on a Teflon-coated surface in a laminar flow hood. DMSO containing disc was used as a negative control and aeroplysinin-1 (5.9 nmol/methylcellulose disc) was used as a positive control [11 (link)]. After incubation, CAM was examined under a stereomicroscope Nikon SMZ 745 T (Nikon, Tokyo, Japan), and photographed with a camera Nikon DS-Ri2 (Nikon, Tokyo, Japan). Results were analyzed by two independent observers. Each condition was scored as positive if a significant reduction or rebound of vessels in the treated area was observed.
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7

Timed Ova/Embryo Isolation Protocol

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Mated dams from both groups were sacrificed using cervical dislocation and were subjected to ova/embryo isolation on embryonic day 2 of pregnancy (ED2, approx. 32 h after presumed ovulation [15 (link),20 (link)]), on embryonic day 3 of pregnancy (ED3, approx. 56 h after presumed ovulation [16 (link)]), and on day 4 of pregnancy (ED4, approx. 80 h after presumed ovulation [11 (link),15 (link),16 (link)]). Recovery was performed by flushing oviducts and uteri using a flushing-holding medium [23 ] containing 1% bovine serum albumin (BSA, Sigma-Aldrich, St. Louis, MO, USA). Immediately after isolation, the collected material was subjected to stereomicroscopic classification (Nikon SMZ 745T, Nikon, Tokyo, Japan), and the numbers of isolated ova/embryos were determined. Data gathering was performed between the years 2011 and 2020. During this period, ova/embryo isolation was performed eight times on ED2, three times on ED3, and five times on ED4.
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8

Histological Evaluation of Cartilage Repair

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The animals were euthanized for further investigation at 8 weeks postoperative. The knee samples were photographed using a Nikon SMZ745T (Nikon, Tokyo, Japan). Each section was stained with hematoxylin & eosin and Safranin-O staining. The histological score for joint surface repair of each section was evaluated as previously reported10 (link)38 (link). The scoring was performed independently by two blinded observers. Quantitative histomorphometry of Safranin O-stained sections was performed using Image J software (National Institutes of Health, Bethesda, MD, USA) as previously reported20 (link). The total region of the articular cartilage repair site was defined and measured as the total repair tissue volume. The percent Safranin O-stained repaired tissue in the total soft tissue volume (%Saf-O) was obtained. The depth of the cartilage in the repaired tissue was measured at 8 weeks postoperative using Image J software. All data are presented as the means ± standard error of the mean (SEM).
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9

Maxillary Bone Resorption Quantification

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The maxillae were removed and defleshed by a dermestid beetles colony. After bleaching with 3% hydrogen Peroxide, the bone was stained with 1% toluidine blue. Bone resorption measurements were assessed under a Nikon microscope (Nikon SMZ745T, Nikon Instruments Inc., Japan). The polygonal area was measured using Image J (NIH) on buccal and palatal surfaces for each segment and a standard calibrator was used for calibration at the same magnification. The bone resorption area was enclosed coronally by the CEJ of the molars, laterally by the exposed distal root of the first molar and the exposed mesial root of the third molar, and apically by the alveolar crest.
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10

Specimen Collection and Identification of Furcula pusio

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One F. pusio male specimen was field collected in March 2011 in Pajarito, a locality from Medellin, Antioquia, Colombia (06°17′10.7″N, 75°36′43.7″W) at 1929 m above sea level and identified using morphological keys [[21] (link), [22] (link), [23] (link)]. Specimen collection was done under collection permit 16455 issued by CORANTIOQUIA on May 18, 2011. The specimen was preserved in 95% ethanol and stored at −20 °C until DNA extraction. Then, the specimen was dried at room temperature and photographed using a digital camera OPTIKAM Pro 3 connected to a trinocular stereomicroscope (Nikon SMZ745T, Nikon Corp., Tokyo, Japan) as support for species identification. The abdomen was dissected for total genomic DNA using a GenElute™ Mammalian Genomic DNA Miniprep Kit (Sigma-Aldrich) following the manufacturer's protocol. The DNA was quantified using the Qubit dsDNA High Sensitivity assay (Thermo Fisher Scientific, Waltham, MA, USA) and stored at −20 °C until further processing. Species identification was confirmed by comparing COI sequences at the barcode of life data systems BOLD and GenBank databases [24 (link),25 (link)].
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