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39 protocols using mettl3

1

Protein Expression Analysis of m6A Regulators

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The cells were extracted with protein lysis buffer (Beyotime, China) supplemented with protease inhibitor cocktail. Protein concentration was determined using the BCA Kit (Beyotime, China). Proteins (25–35 μg) were separated on a 10% polyacrylamide precast SDS gel (Bio-Rad) followed by blotting on PVDF membranes (Millipore Billerica, MA, USA). The membranes were probed with the following antibodies against: Zfp217 (Abcam, USA, #48133), METTL3 (Abcam, #195352), ALKBH5 (Abcam, #69325), PPARγ (Cell Signaling Technology, USA, #C26H12), aP2 (Cell Signaling Technology, #D25B3), FTO (Santa cruz, USA, #sc-271713), YTHDF2 (Proteintech, China, #24744-1-AP), β-actin (Abclonal, China, #AC026), LMNB1 (Abclonal, #A1910) and Tublin (Abclonal, #AC021). Secondary antibodies and detection were according to description previously. For IP experiments, cells were lysed in IP buffer (Beyotime, China) and incubated with antibodies followed by the pull-down with protein A/G beads for subsequent western blot analysis.
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2

Western Blot Analysis of Protein Expression

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We lysed total protein from treated cells using RIPA buffer (Cell Signaling Technology) supplemented with Protease Inhibitor Cocktail (Thermo Fisher; 78430). Western blotting was performed as previously described41 (link), and the primary antibodies included GAPDH (Santa Cruz, sc-137179), LKB1 (Santa Cruz, sc-32245), ALKBH5 (Proteintech, 16837-1-AP), CTCF (Santa Cruz, sc-271474), METTL3 (Abcam, ab195352), METTL14 (Abcam, ab220030), FTO (Abcam, ab126605), WTAP (Proteintech, 60188-1-Ig), SOX2 (Cell signaling, #3579), SMAD7 (Santa Cruz, sc-11392), and MYC (Cell signaling, #13987). We performed densitometric analyses of band intensity using ImageQuant TL 8.2 image analysis software (GE Healthcare Life Sciences, USA) and GAPDH was as an internal control.
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3

Western Blot Analysis of Protein Expression

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Proteins from cells or fresh mice tumors were extracted using RIPA lysis buffer by homogenization followed by centrifugation to remove insoluble material and clarified supernatant was measured using BCA protein assay kit (Bio‐Rad). Subsequently, 50–150 μg of protein was resolved by NuPAGE Bis‐Tris or 10% Tris‐Glycine gels and transferred to PVDF membranes (Bio‐Rad). Membranes were blocked in 5% milk TBST buffer and then incubated with the indicated antibodies including Mettl3 (Abcam, ab195352), Mettl14 (Fisher Scientific, ABE1338MI), Gapdh (PROTEINTECH GROUP, HRP‐60004), Stat1 (PROTEINTECH GROUP, 10144‐2‐AP), p‐Stat1 (Cell Signaling Technology), Irf1 (PROTEINTECH GROUP, 11335‐1‐AP), Ythdf1 (PROTEINTECH GROUP, 17479‐1‐AP), Ythdf2 (PROTEINTECH GROUP, 24744‐1‐AP), and Ythdf3 (Sigma‐Aldrich, Inc., SAB2108258) overnight at 4°C. After being washed, membranes were incubated with HRP‐conjugated secondary antibodies at 25°C for 1 h and visualized on autoradiography film (Genesee Scientific Inc, 30‐100) using the enhanced chemiluminescence (ECL) detection system (Thermo Scientific).
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4

Western Blot Analysis of Apoptosis Markers

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The total proteins were extracted by radio immunoprecipitation assay (RIPA) reagent and quantified by bicinchoninic acid assay (BCA) assay (Bio-Rad, Hercules, CA, USA), the samples were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transfected onto the polyvinylidene fluoride (PVDF) membrane (Thermo Fisher Scientific). After blocking, PVDF membrane was incubated with specific antibodies overnight, including METTL3 (cat# ab195352, Abcam), Bcl-2 (cat# ab32124, Abcam), Bax (cat# ab3191, Abcam), cleaved caspase-3 (cat# ab32499, Abcam), cleaved caspase-9 (cat# ab32539, Abcam), and clusterin (cat# ab269342, Abcam) at 4°C. Subsequently, the membrane was incubated with goat anti-rabbit/mouse IgG (Abcam). Protein bands were visualized by ECL Western Blotting Substrate Kit (Abcam) and the intensity was determined by Image J.
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5

Whitefly Protein Extraction and Western Blotting

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Total protein was extracted from 200 adult whiteflies per sample with the cell lysis buffer for Western and IP Kit (Beyotime) following the manufacturer’s instructions. Protein was quantified using the BCA Protein Assay Kit (Beyotime), and 20 μg of total protein of each sample was then analyzed (CWBio). Rabbit polyclonal antibody of CYP4C64 was raised against a synthetic peptide (Jiaxuan Biotech). The sequence of the peptide of CYP4C64 was N-K-R-I-Q-L-V-R-T-M-N (from sites 25 to 35). Antibody specificity was confirmed by BLAST search of the peptide sequence against the genome of B. tabaci and transcriptome datasets of different development stages (53 (link)). Western blots were probed for METTL3 (Abcam), METTL14 (Cell Signaling Technology), and β-actin antibody (Abcam). β-Actin was used as a loading control in Western blot.
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6

Immunohistochemical Analysis of METTL3 and RAGE in Cervical Cancer

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Cervical cancer or adjacent non-tumor cervical tissues were embedded in O.C.T. compound (Leica Microsystems, Bannockburn, IL, USA) and 10-μm sections were cut using cryostat. Prior to immunofluorescence staining, slides were fixed with methanol for 20 min. After washing with PBS three times, slides were permeabilized in Triton X-100 for 15 min and incubated with METTL3 (1:500, Abcam) and RAGE (1:50, Abcam) primary antibodies overnight at 4°C. Slides were washed with PBS three times and incubated with secondary antibodies (goat anti-rabbit Alexa Fluor 488 or goat anti-mouse Alexa Fluor 594, 1:200 dilution, Life Technologies) for 1 h. Tissue sections were mounted in Vectashield mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, Burlingame, CA, USA), imaged with fluorescent microscopy (Leica Microsystems), and prepared by a Zeiss LSM image browser software.
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7

Western Blot Analysis of Molecular Markers

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Western blot analysis was performed as described previously,31 The following are used as the primary antibodies: METTL3 (1:1000; Abcam, Cambridge, UK), N‐cadherin (1:10 000; Abcam, Cambridge, UK), αSMA (1:500; Sigma‐Aldrich Corp), ZO‐1 (1:500; Invitrogen, Carlsbad, CA, US), MMP9 (1:500; Abcam, Cambridge, UK), pGSK3β (phospho Ser9) (1:1000, Immunoway Biotechnology, Plano, US), GSK3β (1:1000, Immunoway Biotechnology, Plano, US), cyclinD1 (1:1000, Immunoway Biotechnology, Plano, US), β‐catenin (1:1000, Cell Signaling Technology), β‐actin (1:1000, Cell Signaling Technology) ,β‐tubulin (1:1000, Cell Signaling Technology) and GAPDH (1:1000; Cell Signaling Technology). The following were used as secondary antibodies: goat anti‐rabbit IgG H&L (HRP) pre‐adsorbed antibody (1:5000; Abcam, Cambridge, UK) and goat anti‐mouse IgG H&L (HRP) pre‐adsorbed antibody (1:5000; Abcam, Cambridge, UK).
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8

METTL3 Regulates PI3K/AKT/mTOR Pathway

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These assays were conducted as described previously.21 The primer sequences of reverse transcription‐quantitative polymerase chain reaction (RT‐qPCR) were as follows: METTL3_F: CAAGCTGCACTTCAGACGAA and METTL3_R: GCTTGGCGTGTGGTCTTT; PI3K_F: TCTGTCACCAATCCCAAG and PI3K_ R: TGAGCACCTCTGAAACAA; AKT_ F: CACGATACCGGCAAAGAA and AKT_R: AGGGCTGCTCAAGAAGGA; mTOR_F: TCCGAGAGATGAGTCAAGAGG and mTOR_R: CACCTTCCACTCCTATGAGGC; P70S6K_ F: TTGAGTCATCTGGGCTGT and P70S6K_ R: AAATGCTGCTTCTCGTCT; 4EBP1_ F: GGTGTTCACGAAGAGGAGGG and 4EBP1_R: ATACTGGGCAGGCGTTGG; and GAPDH_F: TGGACCTGACTTGCCGTCTA and GAPDH_ R: CCCTGTTGCTGTAGCCAAATT. The primary antibodies were as follows: METTL3 (ab195352, 1:1000; Abcam, UK, London), p‐PI3K‐p85α (Tyr607) (AP0153, 1:500; Bioworld, China, Beijing), p‐AKT (S473) (CST, USA, New York, #4058, 1:1000), p‐mTOR (Ser2448) (CST, USA, New York, #5536, 1:1000), p‐P70S6K (Ser371) (CST, USA, New York, #9208, 1:1000), p‐4EBP1 (Ser65 + Thr70) (Bioss, China, Beijing, bs‐3720R, 1:500), β‐Tubulin (Bioworld, China, Beijing, AP0064, 1:2000), and GAPDH (Bioworld, China, Beijing 1:5000). The secondary antibody was AffiniPure goat anti‐rabbit IgG (H + L) (Jackson ImmunoResearch Inc, USA, New York).
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9

Protein Extraction and Immunoblotting Protocol

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Total protein extracts were isolated with RIPA lysis buffer in the presence of a protease inhibitor mixture and phosphatase inhibitor cocktail (SIGMA). Protein extracts were quantified with the BCA Protein Assay Kit (Pierce). Equal amounts of total cellular lysates (30 μg) were separated by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to nitrocellulose membrane, analyzed by immunoblotting with the appropriate antibodies and then revealed by ECL (GE Healthcare). The antibodies used were as follows: ADAR1 (Santa Cruz Biotechnology), ADAR1 (Bethyl), CDK2 (Santa Cruz Biotechnology), YTHDF1 (Abcam), METTL3 (Abcam), METTL14 (Bethyl), cyclinE (Santa Cruz Biotechnology), p57 (Santa Cruz Biotechnology), Skp2 (Santa Cruz Biotechnology), CDC14B (LifeSpan), ADAR2 (Santa Cruz Biotechnology), Ubiquitin (Thermo Fisher), β-actin (Santa Cruz Biotechnology), GAPDH (Cell Signaling), and the anti-rabbit and anti-mouse peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology).
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10

Quantitative Protein Analysis by Western Blot

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Total cellular proteins were extracted using a total protein extraction kit (Beyotime, China). Cell lysates were separated by 10% SDS-PAGE gel electrophoresis and transferred to a nitrocellulose membrane. The membranes were blocked with 5% nonfat milk and incubated with the primary antibodies and then incubated with species-specific secondary antibodies. The following antibodies were used at the indicated concentrations METTL3 (1:1000, Abcam, USA), GAPDH (1:1000, CST, USA).
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