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Trilogy reagent

Manufactured by Cell Marque
Sourced in United States

Trilogy reagent is a laboratory solution used in histological processing and staining procedures. It serves as a multi-functional reagent, designed to facilitate different steps in the preparation and analysis of tissue samples. The core function of Trilogy reagent is to aid in the deparaffinization, rehydration, and antigen retrieval processes, which are critical for subsequent immunohistochemical or other analytical techniques.

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12 protocols using trilogy reagent

1

Immunohistochemical Analysis of Vimentin Expression

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Tissues were fixed in formalin and embedded in paraffin, and 2-μm-thick consecutive sections were sliced and mounted on glass slides. The slides were first incubated at 65°C for 30 min and then subjected to deparaffinization in xylene followed by rehydration in a graded ethanol series. Then, the sections were boiled in Trilogy reagent (Cell Marque, Rocklin, CA, USA) for 10 minutes for antigen retrieval. After washing with 1 × PBS, the slides were immersed in 3% hydrogen peroxide for 10 min to suppress endogenous peroxidase activity. After three rinses with 1 × PBS, the sections were exposed to a mouse anti-vimentin antibody (Genetex, Irvine, CA, USA) for 1 hour at room temperature. After three rinses with 1 × PBS, the slides were incubated in a biotinylated secondary antibody (Dako, Glostrup, Denmark) for 25 min. The slides were then rinsed three times with 1 × PBS, followed by the addition of horseradish peroxidase (HRP)-conjugated streptavidin for 25 min at room temperature. Peroxidase activity was detected by incubating the slides in the chromogenic substrate 3, 3′-diaminobenzidine (DAB) (Dako) at room temperature. The slides were then counterstained with hematoxylin.
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2

Immunohistochemical Profiling of Cell Markers

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Tissues were fixed in formalin and embedded in paraffin, and 2-μm-thick consecutive sections were cut and mounted onto glass slides. The slides were first incubated at 65°C for 1 hour and then deparaffinized in xylene, rehydrated in graded ethanol solutions, and finally boiled in Trilogy reagent (Cell Marque, Rocklin, CA) for 10 minutes for antigen retrieval. After washing with 1× phosphate-buffered saline (PBS), the slides were immersed in 3% hydrogen peroxide for 10 minutes to suppress endogenous peroxidase activity. After three rinses with 1× PBS, the sections were subsequently incubated with antibodies against Hsp90, vimentin, N-cadherin and E-cadherin for 1 hour at room temperature. After three rinses with 1× PBS, the slides were incubated with a biotinylated secondary antibody (Dako, Glostrup, Denmark) for 25 minutes. Following three rinses with 1× PBS, horseradish-peroxidase conjugated streptavidin was added for 25 minutes at room temperature. Peroxidase activity was detected using 3,3-diaminobenzidine (DAB) (Dako) at room temperature. The slides were then counterstained with hematoxylin.
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3

Immunohistochemical Analysis of Formalin-Fixed, Paraffin-Embedded Tissue

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The tumors of the mice were fixed in formalin and embedded in paraffin. The 2-μm-thick consecutive sections were cut from the paraffin-embedded tissue blocks and floated onto glass slides. The slides were first incubated at 65 °C for 1 h and then deparaffinized in xylene, rehydrated in graded ethanol solutions, and boiled in Trilogy reagent (Cell Marque, Rocklin, CA, USA) for 10 min for antigen retrieval. After washing with 1 × PBS, the slides were immersed in 3% hydrogen peroxide for 10 min to suppress endogenous peroxidase activity. After triple-rinsing with 1 × PBS, the sections were exposed to the appropriate primary antibodies for 1 h at room temperature, after which they were rinsed three times with 1 × PBS and incubated with a biotinylated secondary antibody (Dako, Glostrup, Denmark) for 25 min. After three rinses with 1 × PBS, the slides were treated with horseradish peroxidase-conjugated streptavidin for 25 min. The peroxidase activity was developed with DAB (Dako), followed by counterstaining with hematoxylin.
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4

Immunohistochemical Detection of Calcineurin

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Tissues were fixed in formalin and embedded in paraffin, and 2-μm-thick consecutive sections were sliced and mounted on glass slides. The slides were first incubated at 65 °C for 30 min and then subjected to deparaffinization in xylene followed by rehydration in a graded ethanol series. Then, the sections were boiled in Trilogy reagent (Cell Marque, Rocklin, CA, USA) for 10 min for antigen retrieval. After washing with 1 × PBS, the slides were immersed in 3% hydrogen peroxide for 10 min to suppress endogenous peroxidase activity. After three rinses with 1 × PBS, the sections were exposed to a mouse anti-calcineurin antibody (Genetex, Irvine, CA, USA) for 1 h at room temperature. After three rinses with 1 × PBS, the slides were incubated in a biotinylated secondary antibody (Dako, Glostrup, Denmark) for 25 min. The slides were then rinsed three times with 1 × PBS, followed by the addition of horseradish peroxidase (HRP)-conjugated streptavidin for 25 min at room temperature. Peroxidase activity was detected by incubating the slides in the chromogenic substrate 3, 3`-diaminobenzidine (DAB) (Dako) at room temperature. The slides were then counterstained with hematoxylin.
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5

Immunohistochemistry Staining Protocol

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Slides bearing tissue sections for immunohistochemistry were deparaffinized and then rehydrated through a graded ethanol series. For antigen retrieval, slides were boiled in Trilogy reagent (Cell Marque, Rocklin, CA, USA) for 10 min, allowed to cool at room temperature for 30 min, washed with 1× PBS and then immersed in 3% hydrogen peroxide for 10 min to block endogenous peroxidase activity. After three rinses with 1× PBS, sections were exposed to primary antibodies (Santa Cruz Biotechnology Inc.) for 1 h at room temperature, washed thrice with 1× PBS and then incubated with biotinylated secondary antibodies (Dako, Glostrup, Denmark) for 25 min. After another three rinses with 1× PBS, sections were incubated with horseradish peroxidase-conjugated streptavidin for 25 min at room temperature, and then, the peroxidase activity was detected using a DAB substrate chromogen (Dako) at room temperature. Lastly, sections were counterstained with hematoxylin and eosin.
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6

Immunohistochemical Analysis Protocol

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The slides used for the immunohistochemical analysis were initially incubated for 30 min at 65°C followed by deparaffinization in xylene and rehydration in graded ethanol solutions. Afterward, the slides were boiled in Trilogy reagent (Cell Marque, Rocklin, CA) for 10 min in a microwave oven for antigen retrieval. The slides were washed with 1× PBS and were immersed in a 3% hydrogen peroxide solution for 10 min to suppress endogenous peroxidase activity. After the slides were rinsed three times with 1× PBS, the sections were incubated with the appropriate primary antibodies for 1 hr at room temperature, rinsed three times with 1× PBS, and incubated with a biotinylated secondary antibody (Dako, Glostrup, Denmark) for 25 min. The slides were rinsed three times again with 1× PBS and treated with horseradish peroxidase-conjugated streptavidin for 25 min at room temperature. Peroxidase activity was detected using DAB substrate (Dako), which served as a chromogen, at room temperature, after which the slides were counterstained with hematoxylin.
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7

Immunostaining for Histone Modifications

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For immunostaining, slides were deparaffinized and antigen retrieval was performed for 15 min in Trilogy reagent (Cell Marque). After quenching peroxidase activity and blocking nonspecific binding, slides were incubated for 1 h with anti-GFP antibody (MBL), anti-phosphohistoneH3 Serine 10 antibody (Santa Cruz Biotechnology) or anti-phosphohistone H2AX [50 (link)] followed by incubation with HRP-conjugated anti-rabbit antibody (Immpress kit, Vector Labs) for 30 min in a wet chamber. Slides were developed with DAB solution, counterstained with hematoxylin (Invitrogen), dehydrated, and mounted with Permount mounting media (Fisher).
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8

Immunohistochemical Analysis of Microglia

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The goal of these experiments was to provide a qualitative evaluation of the appearance and location of microglia. Slides were blocked in 3% horse serum for 1-h. Primary antibodies were then applied overnight at 4 °C. The antibodies used were rabbit anti-Iba-1 (1:300; Wako Chemicals, Cape Charles, VA), and mouse anti-NeuN (1:1000; Encor Biotechnology, Gainesville, FL). Antigen retrieval with Trilogy reagent (Cell Marque) at 95 °C for 25-min was required for optimal staining. Immunoreactivity was detected using 1:500 dilutions of species appropriate Alexa Fluor antibodies raised in donkey: anti-rabbit AlexaFluor 594 secondary and anti-mouse Alexa Fluor 488 secondary were used for IBA-1 and NeuN stains, respectively. Sections were mounted in VectaShield with DAPI (Vector Labs) prior to imaging. Positive control tissues and concentration matched Ig controls were included with each immunoassay.
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9

GFAP Immunohistochemistry in Tissue Sections

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Slides were blocked in 3% horse serum for 1-h. Primary antibodies were then applied overnight at 4 °C. The antibody used was mouse anti-GFAP (1:500; Encor Biotechnology). Antigen retrieval with Trilogy reagent (Cell Marque, Rocklin, CA) at 95 °C for 15-min was required for optimal staining. Immunoreactivity was detected using 1:500 Alexa Fluor 594 anti-mouse raised in donkey. Sections were mounted in VectaShield with DAPI (Vector Labs) prior to imaging. Positive control tissues and concentration matched Ig controls were included with each immunoassay.
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10

Immunohistochemical Analysis of Mouse Tumors

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Excised mouse tumors were fixed in formalin and embedded in paraffin. The 2-μm-thick consecutive sections were cut from the paraffin embedded tissue blocks and floated onto glass slides. Slides were first incubated at 65 °C for 1 h and then deparaffinized in xylene, rehydrated in graded ethanol solutions, and finally boiled in Trilogy reagent (Cell Marque, Rocklin, CA, USA) for 10 min for antigen retrieval. After washing with 1× PBS, the slides were immersed in 3% hydrogen peroxide for 10 min to suppress endogenous peroxidase activity. After triple-rinsing with 1× PBS, the sections were exposed to the appropriate primary antibodies for 1 h at room temperature, after which they were again triple-rinsed with 1× PBS and then incubated with a biotinylated secondary antibody (Dako, Glostrup, Denmark) for 25 min. After triple-rinsing with 1× PBS, the slides were treated with horseradish peroxidase-conjugated streptavidin for 25 min. The peroxidase activity was developed with 3,3′-diaminobenzidine (DAB, Dako), followed by counterstaining with hematoxylin.
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