The largest database of trusted experimental protocols

26 protocols using 0.22 μm filter unit

1

Isolation and Purification of Capsular Polysaccharides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Capsular polysaccharides were isolated as described, with some modifications [5 (link), 18 (link)]. Briefly, cells were pelleted from cultures at 3,450 x g for 15 min at 4°C. Five mg of glass beads (4 mm, Fisher) per g of cells were added and the mixture was gently shaken by vortex for 1 min. A volume of 50 ml of distilled water was added per g of disrupted cells and centrifuged at 8000 x g for 10 min at 4°C. The supernatant was recovered, clarified in a 0.22 μm filter unit (Millipore) and lyophilized. To separate the capsular arabinomannan (AM) from the rest of capsular polysaccharides, the capsule residue was resuspended in 4 ml of distilled water and subjected to a chloroform:methanol:water extraction (1:1:0.9). The upper phase was recovered and incubated in a rotavapor at 40°C overnight. Proteinase K (Sigma) was added at 10 mg/ml in a 50 mM Tris-HCl pH 7.5, 10 mM CaCl2 buffer and incubated overnight at 37°C. The deproteinated solution was dialyzed for 3 d at 4°C in distilled water, lyophilized and chromatographed on a column (90 cm x 1.8 cm) of Bio-Gel P-10 (Bio-Rad) using 0.1 M NaCl in 0.1% acetic acid. Collected fractions of 4 ml were assayed for carbohydrate content by the phenol-sulfuric acid assay. Pooled fractions were dialyzed in water and lyophilized. The concentration of protein was determined on each isolation step by Bradford.
+ Open protocol
+ Expand
2

Preparation of Tannic Acid, Heparin, and Gallic Acid

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tannic acid was obtained from MP Biomedicals LLC, Solon, OH, USA and Post Apple Scientific Inc., North East, PA, USA. Tannic acid was dissolved in deionized water and sterilized using a 0.22 μM filter unit (Millipore) and 5 mM stock solutions were prepared. Heparin and gallic acid were purchased from Sigma-Aldrich and dissolved in water and sterilized in the same way to produce stock concentrations of 500 mg and 5 mM, respectively
+ Open protocol
+ Expand
3

Isolation and Purification of GMMA

Check if the same lab product or an alternative is used in the 5 most similar protocols
To produce GMMA, the strains were grown in medium supplemented with antibiotics (30 μg/mL kanamycin for Ss; 30 μg/mL kanamycin and 100 μg/mL erythromycin for Sf2a) to OD600nm = 0.3. The cultures were then diluted into 1 L of fresh medium (without antibiotics) to a starting OD600nm of 0.05 and incubated at 37 °C. After growing to OD600nm of 0.4, in case of Ss, and of 0.3, in case of Sf2a, cultures were centrifuged for 15 min at 5000 × g and the supernatants removed for GMMA preparation.
The bacterial pellets were solubilized after two washes with cold phosphate buffered saline (PBS) by resuspending in lysis buffer (0.8 M urea, 0.4% SDS, 1 mM DTT and 20 mM Tris, pH 7.4) to prepare lysates.
The culture supernatants were filtered through a 0.22 μm filter unit (Millipore). The filtered samples were concentrated in a Stirred Cell Model 8400 (Millipore) through a 100,000 Da regenerated cellulose membrane (Millipore). GMMA were then separated from soluble proteins by ultracentrifugation at 186,000 × g for 2 h at 4 °C (Optima™ L-series, 45Ti rotor, Beckman Instruments). The GMMA pellets were washed once with cold PBS, resuspended in 20 mM Tris, pH 7.4, then filtered through a 0.22 μm filter.
+ Open protocol
+ Expand
4

Isolation and Characterization of Breast Cancer Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For FACS-sorted BCSCs, cells were stained by ALDEFLUOR™ Kit and suspended in the assay buffer with 5 × 106 cells/ml. The ALDH-positive BCSCs were isolated by flow cytometry sorting. For mammosphere enriched BCSCs, the suspending mammosphere cultured cells were centrifuged at 400 g for 3 min to collect the pellets, and trypsinized to single cells. To harvest the BCSC-derived CM, BCSCs isolated from flow cytometry sorting or mammosphere culturing were seeded in 10 cm dish with regular medium supplemented with 10% FBS. The cells were cultured in monolayer for 48 h to harvest the supernatant conditioned medium. The CM from parallel cultured parental cells was used as control. The CM was collected and centrifuged at 2000 g for 3 min and filtered with a 0.22 μm filter unit (Millipore) to deplete any cell debris. In the Boyden co-culture system (3 μm pore filters; Corning), BCSCs were seeded on the upper chamber, and the same number of parental cells were seeded on the lower compartment. In the control setting, the same number of parental cells were used in both chambers. Cell number in the lower compartment was counted 48 h later. All the cells were cultured with the CM from or co-cultured with the respective same cell line.
+ Open protocol
+ Expand
5

Isolation and Characterization of NK-EVs

Check if the same lab product or an alternative is used in the 5 most similar protocols
NK-92 cells were cultured in Advanced RPMI-1640 for 2 days before isolation of NK-EVs. The medium was collected and centrifuged at 2000g for 10 min at 4 °C. The supernatant was filtered with a 0.22-μm filter unit (Millipore) to remove cellular debris and then ultracentrifuged in a Beckman SW32Ti rotor at 100,000 g for 2 h at 4 °C. The pellets were washed with PBS, ultracentrifuged again, and resuspended in PBS. The recovered NK-EV protein was measured using the Micro BCA Protein Assay Kit (Thermo Fisher Scientific). The size distribution of NK-EVs was quantified by nanoparticle tracking analysis (NTA) with NanoSight NS300 (Malvern).
+ Open protocol
+ Expand
6

Isolation of Extracellular Vesicles from HBV-infected Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The medium of HBV-infected PHHs, HepG2.2.15.7 cells, and HepG2 cells was collected and centrifuged at 2000 g for 10 min at 4 °C. The supernatant was filtered with 0.22-μm filter unit (Millipore, USA) to remove cellular debris. Next, the supernatant was ultracentrifuged in Beckman SW41Ti rotor at 35,000 rpm for 70 min at 4 °C. The pellets were washed with 11 mL of PBS (−) and ultracentrifuged again. Finally, the pellets were resuspended in PBS (−).
+ Open protocol
+ Expand
7

Soil Contamination Leachate Study

Check if the same lab product or an alternative is used in the 5 most similar protocols
A range of reaction vessels were established in 100 mL rubber butyl stoppered glass bottles, in which uncontaminated soil was mixed 5% w/v with filtered (0.22 μm filter unit, Millipore, US) alkaline leachate (pH 13.6) or leachate adjusted to pH 7.5 using conc HCl. In addition, both the alkaline and pH adjusted leachates were mixed with uncontaminated soil that had been double autoclaved prior to use. All reaction vessels were prepared within an anaerobic chamber (Bugbox, Don Whitely, UK). Reaction vessels were prepared in triplicate (9 per reaction condition) and incubated at 4, 10 or 20°C. Samples (1 mL) were taken every 4 weeks, centrifuged at 8000 xg for 2 minutes and filtered using a 0.45μm filter prior to ISA analysis using HPAEC-PAD.
+ Open protocol
+ Expand
8

Characterization of APC/C Complex Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The formation of APC/C was examined via gel filtration chromatography using the SMART system and a Superose 6 PC 3.2/30 column (GE Healthcare). HeLa cells expressing FLAG-tagged wild-type, T7A-mutated, or T7D-mutated Cdc26 were treated with a siRNA against endogenous CDC26 and seeded into 10 cm dishes. The cells were collected, washed with PBS, and lysed in 150 μl of lysis buffer. The lysates were then centrifuged at 15,000 g for 15 min at 4°C, and the supernatants were filtered with a 0.22 μm filter unit (Millipore). The samples were loaded onto a Superose 6 PC 3.2/30 column that had been equilibrated with 0.5% NP-40 lysis buffer. The column was run at a flow rate of 40 μl/min in buffer comprising 150 mM NaCl, 50 mM HEPES-KOH (pH 7.5), and 0.1 mM DTT. Aliquots of the fractions (100 μl) were analyzed by immunoblotting. Protein sizes were estimated using molecular mass size markers (thyroglobin, 669 kDa; catalase, 232 kDa; aldolase, 150 kDa; bovine albumin, 66 kDa; and β-amylase, 20 kDa).
+ Open protocol
+ Expand
9

Purification of TaCCA1 Isoforms

Check if the same lab product or an alternative is used in the 5 most similar protocols
The CDS of TaCCA1-7A/7B/7D was amplified and cloned into the pMAL-c2X vector (GE Healthcare). The primers used are shown in Supplementary Table 1. After the cell culture was induced with Isopropyl-β-D-thiogalactoside (IPTG), it was incubated at 18°C overnight. Bacteria were harvested and lysed with a high-pressure cell cracker. After centrifugation, the cleared extract was diluted and loaded on amylose-coupled agarose resin columns prepared according to the manufacturer’s instruction (GE Healthcare). After columns were washed, maltose binding protein (MBP) and recombinant TaCCA1-7A/B/D were eluted and filtration by 0.22 μm filter unit (Millipore); the purified MBP and rTaCCA1-7A/B/D were aliquoted and stored at −80°C.
+ Open protocol
+ Expand
10

Confirming Bacillus Spore Contamination

Check if the same lab product or an alternative is used in the 5 most similar protocols
To examine the possibility of contamination from native microorganisms in the topsoil coupons during the two-day test, additional tests were performed. These tests included a visual confirmation of colony morphology and the use of polymerase chain reaction (PCR). For the PCR confirmation, the topsoil extracts for both B. anthracis and B. subtilis were replated onto tryptic soy agar and incubated at 35 ± 2°C for 18–24 hours. For each spore species, 50 individual colonies were selected with a 1 μL disposable sterile loop and suspended in 200 μL of 10 mmol/L Tris-HCl (pH 8) in a 1.5 mL microcentrifuge tube containing a 0.22 μM filter unit (Millipore; Bedford, MA). The tubes were then heated at 95°C for 20 minutes and centrifuged (Avanti J-26XPI, Beckman Coulter, Inc.; Brea, CA) at 6,000 x g for two minutes. The bacterial lysate was collected and used in a PCR assay to confirm the respective organisms (B. anthracis Cap B domain FAM primers—proprietary sequences, P/N 121P01, Invitrogen Corp.; Carlsbad, CA; B. subtilis RopB primers—forward 5’-GAT GTT GTT TAT GTC CGC ATT GA-3’, reverse 5’-GAG CAC GCA AAA GAA CCG TAA-3’, Taqman-MGB probe 5’-CAC ACG TAA GTT GCC G-3’).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!