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23 protocols using guinea pig anti vglut1

1

Immunostaining with Antibody Panel

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The following primary antibodies were used for immunostaining: goat anti-EphB2 (1:200–1:500, R&D), mouse anti-EphB2 (1:200–1:500, Invitrogen), mouse anti-HA (1:1000, BioLegend), mouse anti-FLAG (1:2000,Sigma), rabbit anti-actin (1:1000, Sigma), goat anti-ephrin-B1 (1:200, R&D systems), guinea pig anti-VGLUT1 (1:5000, Millipore). Secondary antibodies Atto 425, Dylight 488 or Cy2, Dylight 647 or Cy5, and Cy3 from Jackson ImmunoResearch, Rockland or Abcam were used from 1:200 to 1:500.
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2

Immunofluorescence Labeling of Neuronal Markers

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The following antibodies/dilutions were used: mouse anti-parvalbumin (PV) (Millipore) RRID:AB_2174013, 1:2000; rabbit anti-aggrecan (Millipore) RRID:AB_90460, 1:500; rabbit anti-MMP-9 (Cell Signaling) RRID:AB_2144612, mouse anti-β-actin (Sigma-Aldrich) RRID:AB_476744, guinea pig anti-VGluT1 and anti-VGluT2 (Millipore) RRID:AB_2301751 and RRID:AB_1587626, 1:2000; rabbit anti-GFAP (DAKO) RRID:AB_10013382, 1:2000; rabbit anti-Iba-1 (Wako Chemicals USA) RRID:AB_839504, 1:500; followed by appropriate secondary antibodies: goat anti-mouse, anti-rabbit and anti-guinea pig IgG conjugated to Alexa-488, 546 or 647 (Life Technologies) RRID:AB_2534089, RRID:AB_2534093, RRID:AB_2535805, RRID:AB_2534118, 1:1000.
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3

Multimodal Neuroanatomical Tracing Protocol

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Animals were deeply anesthetized and perfused with saline followed by 4%
paraformaldehyde. Frozen brain and spinal cord tissues were cut transversely at
40µm thickness using a sliding microtome. For Cytochrome oxidase
histochemical staining, brain sections were incubated for 2–6 hours at
37°C in 0.1 M phosphate buffer containing 4% sucrose, 0.05% DAB, and
0.03% cytochrome C (Sigma type III). For CST analysis, BDA was visualized with
1% avidin– biotin complex reagent (Vector Laboratories), and followed by
the chromogen diaminobenzidine (DAB; Sigma) or streptavidin conjugated to FITC
or Cy3. The following primary antibodies were used: goat anti-CTB (1: 1000, List
Biologicals), guinea pig anti-VGLUT1 (1:1000, Millipore), rabbit anti-Iba-1
(1:1000, Wako), mouse anti-myelin basic protein (MBP). FITC, Cy3 or Cy5
conjugated donkey anti-goat, donkey anti-guinea pig, donkey anti-mouse, donkey
anti-rabbit secondary antibodies were used subsequently according to the
combination of co-labeling. Finally, Sections were digitally imaged using Zeiss
LSM 880 confocal microscope.
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4

Immunohistochemistry of Neuronal Tissues

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After blocking for 2 hr with 5 % Normal Donkey Serum in PBS, vibratome slices (60 μm in thickness) embedded in 4 % agarose (Sigma) were incubated overnight at 4 °C with primary antibodies. Slices were then washed in PBS (3 × 20 min) and incubated in secondary antibodies for 2 hr at room temperature. Flat-mount preparations were frozen and thawed three times after cryoprotection (1 hr 10 % sucrose in PBS at RT, 1 hr 20 % sucrose in PBS at RT, and overnight 30 % sucrose in PBS at 4 °C), blocked with 5 % Normal Donkey Serum in PBS for 2 hr, and then incubated with primary antibodies for 5 d at 4 °C and washed in PBS (3 × 1 hr) at RT. Subsequently, flat mounts were incubated with secondary antibodies for 1 d at 4 °C and washed in PBS (3 × 1 hr) at room temperature. The following primary antibodies were used in this study: mouse anti-synaptotagmin II (znp-1, 1:500, Zebrafish International Resource Center), rabbit anti-tdTomato (1:1000, Clontech Laboratories), guinea pig anti-VGluT1 (1:500, Millipore), chicken anti-GFP (1:500, thermos Fisher Scientific) and mouse anti-CtBP2 (1:500, BD Biosciences). Secondary antibodies were Alexa 568- and Alexa 633 conjugates (1:1000, Invitrogen).
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5

Immunohistochemistry Profiling of Neural Markers

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Immunohistochemistry was performed as previously described (Lammel et al., 2012). Briefly, animals were intracardially perfused with 4% paraformaldehyde in PBS and post-fixed at 4 °C overnight. 50 µm coronal sections were sliced on a Leica VT1000 vibratome. Primary antibodies used were: guinea pig anti-Vglut1 (1:250; Millipore), guinea pig anti-Vglut2 (1:1000; Millipore), rabbit anti-TH (1:1000; Millipore), rabbit anti-NeuN (1:2000; Abcam), mouse anti-GAD65 (1:250; DSHB U. of Iowa), guinea pig anti-substance P (1:500; Abcam). For spaghetti monster experiments, epitope antibodies used were: rabbit anti-FLAG (1:1000; Sigma), goat anti-myc (1:1000; Abcam), mouse anti-V5 (1:1000; Life Technologies), rat anti-HA (1:1000; Roche). Alexa Fluor dyes conjugated to either 405, 488, 568, or 647 were used for secondary antibodies (Life Technologies, Abcam). All dilutions used were 1:1000 except for Alexa Fluor 405 at 1:500. All images were acquired with an Olympus FluoView FV1200 confocal microscope.
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6

Immunofluorescence Staining of Modified Human Fibroblasts

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Immunofluorescence staining was performed as following. 5 × 104 modified human fibroblasts were planted on Matrigel-coated glass cover-slips the day before induction. Ten to 28 days after viral infection, cells were fixed for 20 min at room temperature in 4% paraformaldehyde in PBS, permeabilized for 30 min in PBS containing 0.2% Triton X-100 and 10% normal goat serum (NGS) and incubated overnight at 4 °C in PBS containing 10% NGS and primary antibodies. Then cells were washed three times with PBS and incubated for 2 h at room temperature with anti-rabbit or anti-mouse secondary antibodies Alexa Fluor-488 or Alexa Fluor-594 (1:500, Invitrogen). The images were acquired by immunofluorescence microscope or Zeiss LSM 510 META confocol microscope with ×40, 1.3 numerical aperture oil-immersion objective.
The following antibodies were used for the immunofluorescence studies: rabbit anti-MAP2 (Sigma-Aldrich, 1:200), mouse anti-Tuj1 (R&D Systems, 1:100), mouse anti-synaptotagmin 1 (Synaptic Systems, 1:100), rabbit anti-synapsin 1(Cell Signaling, 1:200), rabbit anti-synapsin (1:1,000, Millipore), Guinea pig anti-vGluT1 (1:5,000, Millipore), rabbit anti-GABA (1: 3,000, Sigma), mouse anti-peripherin (1:100, Millipore), mouse anti-tyrosine hydroxylase (1:8,000, Sigma), mouse anti-TUJ-1 (1:1,000, Covance) and rabbit anti-TUJ-1 (1:2,000, Covance).
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7

Immunofluorescence Staining of c-fos and vGlut1

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Sections were incubated with 0.3% Triton X-100 in PBS for 30 min, blocked with 2% normal goat serum in PBS for 1 h at room temperature, and then incubated overnight at 4°C with primary antibodies: rabbit anti-c-fos (Abcam, 1:200) and guinea pig anti-vGlut1 (Millipore, 1:100). Sections were then incubated for 2 h at room temperature with the corresponding secondary antibodies: donkey anti-rabbit IgG conjugated with Alexa Fluor 594 (Invitrogen, 1:500) and goat anti-guinea pig IgG conjugated with tetraethyl rhodamine isothiocyanate (TRITC) (ImmunoReagents, 1:300). For negative controls, adjacent sections were treated with the same steps except by replacing the primary antibodies with PBS. Two symmetric images (×200) in the vlPAG area were acquired at the same exposure in each sight of 5–7 sections per subgroup using Nikon Eclipse 80i fluorescence microscope (Nikon, Japan).
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8

Antibody Production and Characterization

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The mouse Crygn peptide CDNFQDQGFMNRVN that was predicted to be antigenic and to discriminate among related proteins was synthesized at Pineda (Berlin, Germany), conjugated to carrier, and used to immunize rabbits. The rabbit anti-Crygd/e was produced by Genescript (Piscataway Township, NJ, USA) by immunization with the peptide RGFQGRHYECSTDHC that is present in both Crygd and Cryg/e. Antibodies were cleaned up by affinity purification. The primary antibody rabbit anti-Cryg was kindly provided by Dr. Samuel Zigler. All three primary antibodies were used in the following dilutions: immunohistochemistry: 1:50 for anti-Crygd/e and Crygn; 1:200 for anti-Cryg, immunocytochemistry: 1:100, and immunoblotting 1:250 for all three antibodies. The primary antibodies guinea pig anti-GlyT2 (Millipore; Darmstadt, Germany) (1:1,000), guinea pig anti-VGluT1 (Millipore) (1:5,000) and the rabbit anti-GlyT2 (1:1,000) have been characterized previously [59 (link),60 (link)]. Mouse anti-flag was obtained from Genescript (1:500).
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9

Artificial Synapse Formation Assay

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Expression vectors were transfected into HEK293 cells. 24 hrs later, HEK293T cells were co-cultured with cultured cortical neurons (DIV16) from neonatal mice at P0. After 24 hrs, cells were fixed with 4% PFA and immunostained with mouse or rabbit anti-Flag (Sigma; 1:1000 both) together with mouse anti-PSD95 (Sysy; 1:500), mouse anti-GABAA γ2 (Sysy; 1:500), or guinea pig anti-vGlut1 (Millipore; 1:500) and mouse anti-vGAT (Sysy; 1:500) respectively. Species-specific AlexaFluor-405-, −546-, and −633-conjugated antibodies (Invitrogen) were used as secondary antibodies. Images were collected with a Nikon A1 confocal microscope using a 60x objective. The quantification of the artificial synapse formation assay results was performed as follows. The fluorescent intensities of the Flag-tagged proteins expressed in the HEK293T cells (e.g. TENs, Nlg1, Nrn1β) and that of the synaptic markers that were recruited to the surface of the HEK293T cells (e.g. GABAγ2, PSD95, vGlut, vGAT) were quantified using Image J. Normalized values equal the fluorescent intensity of the synaptic marker that was examined (GABAγ2/PSD95/vGlut1/vGAT) / the fluorescent intensity of the Flag-tagged protein expressed in the HEK cells (TENs/Nlg1/Nrn1β).
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10

Ultrastructural Localization of VGLUT1

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Adult male Wistar rats were anaesthetised using sodium pentobarbitone (60 mg/kg IP) and perfused transcardially with fixative containing 4 % PFA and 0.1–0.2 % glutaraldehyde (n = 3). Brainstems were removed and postfixed overnight in the same perfusate. Coronal brainstem sections were cut at 50 μm and collected into PBS. Sections were incubated in 50 % ethanol for 30 min to aid antibody penetration, before freeze fracturing in liquid nitrogen. Freeze-fractured sections were incubated in Guinea pig anti-VGLUT1 (1:10,000 in PBS, Millipore, UK) overnight at 4 °C and then in biotinylated donkey anti-Guinea pig secondaries (1:250 in PBS, Jackson ImmunoResearch, USA) for 4 h at room temperature, with three washes in PBS between each incubation. Sections were incubated in ExtrAvidin peroxidise (1:1,500 in PBS, Sigma, UK) overnight at 4 °C and visualised using diaminobenzidine as the chromogen. Stained sections were postfixed in 0.5 % osmium tetroxide (in 0.1 M PB) and dehydrated before embedding in Durcupan ACM resin (Fluka, Switzerland). Areas with suitable staining were prepared for electron microscopy and viewed on a Phillips CM10 transmission electron microscope. Negatives were digitised using an Epson 3200 Photo Perfection scanner.
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