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10 protocols using ab22506

1

Immunohistochemical Analysis of Aortic Plaque

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Histologic sections (3 μm thickness) were prepared from paraffin embedded aortic segments. Representative cross sections were stained with hematoxylin and eosin for the assessment of aortic structure and plaque visualization. Additional unstained slides were used for immunohistochemistry staining for MAC387 (macrophage marker, Abcam ab22506, 1:50 overnight at 4°C), VCAM-1 (vascular cell adhesion molecule-1, Abcam ab98954, 8 μg/ml overnight at 4°C) and p-selectin (CD62p, Bioss bs-0561R, 8 μg/ml overnight at 4°C). Antigen retrieval was performed by heat treatment in Tris EDTA pH 9.0 (for MAC387 staining) or 10 mM Sodium Citrate, 0.05% Tween 20, pH 6.0 (for p-selectin staining) for 20 min using a microwave. Sections were then incubated with a peroxidase labeled polymer (DAKO) as secondary antibody. Staining was performed with chromogen system 3,30-Diaminobenzidine substrate (DAKO) and counterstained in Mayer’s Hematoxylin.
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2

Kidney Tissue Immunohistochemistry and Sirius Red Staining

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Kidney tissue samples were fixed with 4% paraformaldehyde in phosphate-buffered saline, embedded in paraffin, and cut into 5-μM sections. For immunohistochemistry staining, tissue sections were heated in an antigen retrieval buffer. Then, the sections were incubated with 3% hydrogen peroxide, followed by a blocking buffer. The slides were then exposed to the primary antibody at 4 °C overnight. After washing, the slides were incubated with ImmPRESS HRP Horse Anti-Rabbit IgG (MP-7401; Vector Laboratories) or ImmPRESS-AP Horse Anti-Goat IgG (MP-5405; Vector Laboratories) for 1 hour at room temperature. After washing, color was developed with an ImmPACT DAB Substrate Kit, Peroxidase (HRP) (SK-4105; Vector Laboratories) and ImmPACT Vector Red Substrate Kit, Alkaline Phosphatase (AP) (SK-5105; Vector Laboratories). The primary antibodies for immunostaining included antimacrophage (ab22506, Abcam) and antie-α-SMA (ab5694, Abcam). Sirius red staining was performed according to a standard protocol from the manufacturer (Chondrex Inc).
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3

Immunohistochemical Analysis of Mouse Aorta

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Serial sections (5 μm thick) of paraffin‐embedded mouse aortas were placed on poly‐L‐lysine‐coated slides, deparaffinized and treated with H2O2 for suppression of endogenous peroxidase activity. Immunohistochemical analysis was performed with the avidin‐biotin immunoperoxidase technique, as previously described 56. Samples were analysed for Apo B (rabbit‐polyclonal anti‐apolipoprotein B; dilution 1:100; Abcam, ab20737, Abcam: Cambridge, UK), LRP5 (rabbit‐polyclonal anti‐LRP5; dilution 1:50; Abcam, ab38311) and MAC387 that is a marker for tissue infiltrating monocytes 57, 58 [anti‐Macrophage antibody (MAC387); dilution 1:100; Abcam, ab22506]. Images were captured and digitized using a Nicon Eclipse 80i microscope and a Retiga 1330i Fast camera. Controls without primary antibodies were run with each set of specimens and showed no labelling background.
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4

Quantitative PET/CT Imaging of Coronary Arteries

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Animals were sacrificed by i.v. injection of potassium chloride (B. Braun Medical Oy, Helsinki, Finland) immediately after completing the PET/CT scan and the coronary arteries were prepared. Samples of the proximal LAD, proximal LCX and proximal RCA coronary arteries of approximately 3 to 5 cm long together with a blood sample were collected. Samples were weighed and radioactivity was measured using the gamma counter (1480 Wizard 3″; PerkinElmer/ Wallac, Turku, Finland). The radioactivity concentration was expressed as SUV = ([organ activity/organ weight]/[total given radioactivity/animal body weight]). In addition, vessel-to-blood ratios were calculated.
The coronary artery samples were mounted, frozen in isopentane mixed with dry ice, and cut longitudinally into serial 7 μm and 40 μm cryosections. Samples of 40 μm were immediately exposed overnight against a phosphor imaging plate (BAS-TR2025, Fuji Photo Film Co. Ltd., Tokyo, Japan). The distribution of radioactivity on the plate was visualized and quantified using Fluorescent Image Analyzer (Fujifilm FLA-5100, Fuji Photo Film Co. Ltd., Tokyo, Japan). The 40 μm cryosections were stained with hematoxylin & eosin (HE). The sections of 7 μm were stored at -70°C and stained with HE, Movat's pentachrome and macrophage staining (MAC387, ab22506, Abcam, Cambridge, MA, USA).
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5

Immunofluorescence Localization of Calprotectin

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Tissue sections were also used to localize calprotectin using mouse antibody ab22506 (1:5000; Abcam) recognizing S100A9, followed by goat anti mouse IgG-Alexa 488 (1:100), based on a protocol described previously [38 (link)]. The calprotectin antibody has been used previously in equine tissues [16 (link), 45 (link), 46 (link)]. To confirm identity of keratinocytes, mouse monoclonal anti-keratin 14 antibody (Novus Biologicals; LL02, 1:500) was used in place of the anti-calprotectin antibody [47 ]. Rhodamine-tagged wheat germ agglutinin (12.5 μg/ml; Vector Laboratories) was used as a counterstain to outline cell membranes and extracellular matrix, facilitating identification of lamellar microanatomy [37 (link)]. Sections were imaged using a Zeiss 880 confocal microscope system including a Zeiss Axio Observer inverted microscope stand and 25X PlanApo objective (0.8 NA), controlled by Zen software (version 2.1). Large areas of tissue were imaged using the tile scan feature, typically set to 0% overlap between sections. The tiled sections were stitched together using Zen software (version 2.1).
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6

Histological Evaluation of Kidney Injury

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Tissue sections were stained with hematoxylin and eosin (HE) using standard protocols. TUNEL staining was performed with an ApopTag kit (Millipore, Billerica, MA, USA) based on the manufacturer’s instructions. The antibodies for immunohistochemistry used in this study were those against Kim-1 (ab78494, Abcam), 4-hydroxynonenal (4-HNE, ab46545, Abcam), neutrophil gelatinase-associated lipocalin (NGAL, ab63929, Abcam), Ly-6B (NBP2-13077), NFκB p65 (sc-372, Santa Cruz, CA, USA), and MAC387 (ab22506, Abcam). Sections were treated with the Envision+ DAB kit (Dako, Basel, Switzerland) according to the manufacturer’s instructions.
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7

Histological Examination of Tissue Samples

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After macroscopic inspection, sections were fixed in 10% formalin for at least 48 hours and embedded in paraffin. Sections sized 4 mm were stained with Mayer's hematoxylin and eosin, elastin-van Gieson, 0.1% (w/v), Sirius red F3B (Gurr BDH, Poole, United Kingdom), and 2% Alizarin Red (A5533; Sigma-Aldrich, St Louis, Mo). Additionally, sections were stained for macrophages (CD68) (1:200, ab22506; Abcam, Cambridge, United Kingdom) and alpha-smooth muscle actin (aSMA) (1:32.000, A2547; Sigma-Aldrich). Sections were photographed (Nikon E800; Nikon, Tokyo, Japan) and analyzed with ImageJ software (National Institutes of Health and the Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, Wisc). 9 Histological analysis is described in Appendix E1.
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8

Immunofluorescence Staining of Leukocytes

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Isolated leukocyte and lymphocyte samples were fixed in 4% paraformaldahyde in PBS (0.2 mM and pH 7.4) and spun in a cytocentrifuge (8 min at 300g) onto coated slides. Slides were permeabilized and blocked with 10% normal donkey serum in PBS (with 0.5% Triton X-100), and primary antibodies (S100A8/9, Abcam, ab22506; IFITM1, Abcam, ab233545) were incubated at 4 °C overnight, followed by incubation with donkey anti-rabbit Alexa Fluor 488 (Invitrogen, A32790) or anti-mouse Alexa Fluor 555 (Invitrogen, A31570) for 1 h at room temperature. Slides were sequentially stained with CD24 (Abcam, ab202073) on the same slides for 1 h at room temperature, followed by donkey anti-rabbit Alexa Fluor 647 (Invitrogen, A31573). Imaging was done using a VS-120 slide scanner (Olympus), and high-resolution imaging was done using an SP8 spectral confocal microscope (Leica). Image processing was completed in Fiji (version 2.1.0)60 (link).
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9

Histological and Immunohistochemical Evaluation of Alveolar Damage in Murine Lungs

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Mouse left lungs were inflated with 1% low melt agarose (SLBH4354V; sigma, USA) at a pressure of 25 cm H2O and then fixed with 4% neutral paraformaldehyde for 24 hours. Tissues were embedded in paraffin, sectioned (5 μm) and stained with haematoxylin and eosin (H&E). Mean linear intercept (Lm) was measured to show this verity of alveolar destruction as we previously described.14 Briefly, Lm was calculated in each sample based on 10 random fields and observed at a magnification of ×200 using a cross‐line. The sample slides were incubated with primary antibody against Mac‐3 (ab22506; Abcam, USA,1:1000) and Ly6G (sc‐168490; Santa Cruz, 1:250) for detecting of lung macrophages and neutrophils by IHC, respectively. After staining, the slides were examined under a light microscope by a photograph documentation facility (Olympus, Tokyo, Japan). Integrated optical density (IOD) of positive cells in each sample (at least 3 random microscopic fields per lung section, ×400) was analysed by Image pro‐plus 6.0 software.15
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10

Immunohistochemical Staining of Mouse Cornea

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For immunohistochemical staining, mouse corneal sections or RAW264.7-cell climbing slices were deparaffinized in xylene and then dehydrated in gradient ethanol. Sections were filled with EDTA buffer in the microwave oven to repair antigen. To block nonspecific binding, 3% bovine serum albumin (BSA) was added to cover the tissue for 30 min. The samples were then incubated with primary antibodies (diluted with BSA appropriately) overnight at 4°C, followed by incubation with secondary antibodies at room temperature for 50 min in the dark. Nuclei were labelled with 4,6-diamido-2-phenylindole dihydrochloride (DAPI). Spontaneous fluorescence quenching reagent was added and incubated for 5 min. At last, the photographs were taken with a Nikon imaging system (Nikon DS-U3, Nikon, Japan). The primary antibodies were as follows: anti-S100A8 + S100A9 (1:100; #ab288715, Abcam), anti-S100A8/A9 complex (1;100; #ab22506, Abcam) anti-CD68 (1:100; #ab283654, Abcam), anti-F4/80 (1:100; #ab90247, Abcam), anti-NLRP3 (1:100; #GB11300, Wuhan Servicebio Technology Co., Ltd.), and anti-GSDMDC1 (1:100, #sc-393581; Santa Cruz Biotechnology).
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