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Surespin 630 swinging bucket rotor

Manufactured by Thermo Fisher Scientific
Sourced in United States

The SureSpin 630 Swinging Bucket Rotor is a laboratory centrifuge rotor designed for high-speed separation of biological samples. It is suitable for a wide range of applications, including pelleting cells, organelles, and macromolecules. The rotor features a swinging bucket design that allows the sample tubes to orient themselves horizontally during centrifugation, improving separation efficiency. The rotor is compatible with various tube sizes and can achieve maximum speeds of up to 30,000 rpm.

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4 protocols using surespin 630 swinging bucket rotor

1

Isolation and Characterization of Exosomes

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Cells were cultured in DMEM containing 10% FBS, 2 mM L-glutamine, 50 units/ml penicillin and 50 units/ml streptomycin, until 80% confluent. Cells were washed 3 times with PBS and then cultured for 48 h in serum-free DMEM. The conditioned medium was collected and centrifuged for 10 min at 300× g to remove cellular debris. The supernatant was next centrifuged at 3,000× g for 15 min before being filtered through a 0.22 µm polyether-sulfone filter (Nalgene, Rochester, NY, USA) to remove larger vesicles. The filtrate was concentrated approximately 300-fold with a 100,000 molecular-weight cut-off Centricon Plus-70 concentrator (Millipore, Darmstadt, Germany). The concentrated filtrate was centrifuged at 165,000× g in a SureSpin-630 swinging-bucket rotor (Thermo Fisher, Waltham, MA, USA, 30,000 rpm, effective k factor of 219 with 36 ml ultracentrifugation tubes filled to capacity) for 6 h to pellet exosomes. The exosome-enriched pellet was resuspended in 1 ml of PBS containing 25 mM HEPES pH 7.35 (PBS-H) by successive syringing through 22-, 27- and 30-gauge needles, 7 times each. The pellet was washed by centrifuging at 165,000× g for 6 h. The wash steps were repeated until no trace of phenol red was detectable. The final pellet was resuspended in 750 µl of PBS-H, and the protein concentration was determined with a MicroBCA kit (Pierce, Waltham, MA, USA).
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2

Purification of Secreted Viral Particles

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Filtered supernatant fluids collected from transfected cell cultures were concentrated 50-fold using Centricon Plus-70 Centrifugal Filter Units (100-kDa exclusion) (Millipore), then layered on top of a pre-formed continuous 10–40% iodixanol (OptiPrep, Sigma-Aldrich) gradient in Hanks’ balanced salt solution (HBSS, Invitrogen). Gradients were centrifuged in a SureSpin 630 Swinging Bucket Rotor (Thermo SCIENTIFIC) at 30,000 rpm for 24 h at 4°C, and fractions were collected from the top of the tube. The density of each fraction was calculated from the refractive index measured with a refractometer (ATAGO). RNA was isolated from each fraction using QIAamp Viral RNA kit (Qiagen) and the viral amount quantified by qRT-PCR as described below. Infectious virus titers in each fraction were determined as described above.
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3

Purification of Secreted Viral Particles

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Filtered supernatant fluids collected from transfected cell cultures were concentrated 50-fold using Centricon Plus-70 Centrifugal Filter Units (100-kDa exclusion) (Millipore), then layered on top of a pre-formed continuous 10–40% iodixanol (OptiPrep, Sigma-Aldrich) gradient in Hanks’ balanced salt solution (HBSS, Invitrogen). Gradients were centrifuged in a SureSpin 630 Swinging Bucket Rotor (Thermo SCIENTIFIC) at 30,000 rpm for 24 h at 4°C, and fractions were collected from the top of the tube. The density of each fraction was calculated from the refractive index measured with a refractometer (ATAGO). RNA was isolated from each fraction using QIAamp Viral RNA kit (Qiagen) and the viral amount quantified by qRT-PCR as described below. Infectious virus titers in each fraction were determined as described above.
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4

Generating Retrovirus in HEK293T Cells

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RV-GFP was done as described before [116 (link)]. HEK293T cells were co-transfected with pCAG-GFP, pCMV-GP, and pCMV-VSV-G (3:2:1) plasmids by calcium-phosphate precipitation. The media containing retrovirus was collected 48 h after transfection. Cell debris was removed from the supernatant by centrifugation at 3200×g for 10 min and filtration through a 0.22 μm filter. The retrovirus was concentrated by ultra-centrifugation at 160,000×g for 2 h (Sorvall WX Ultracentrifuge and SureSpin 630 swinging bucket rotor; Thermo Fisher Scientific, Waltham, MA, USA). The retroviral pellet was resuspended in 200 μl phosphate buffered saline (PBS; Sigma-Aldrich, St. Louis, MO, USA), aliquoted and stored at −80 °C. The titer was at 105 colony forming units.
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