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7 protocols using alkaline phosphatase

1

Western Blot Analysis of WT1 Protein

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Cells were lysed, and proteins were separated by SDS-PAGE and transferred to PVDF membrane. After blocking of non-specific binding, immunoblots were incubated with monoclonal antibodies against the N-terminal region (a.a. 1–181) of WT1 protein (6F-H2, Dako Cytomation, Carpinteria, CA), GAPDH (6C5, Millipore, Temecula, CA) and His-tag (Anti-Xpress antibody, Invitrogen, Carlsbad, CA) or polyclonal antibody against the C-terminal region (a.a. 431–450) of WT1 protein (C-19, Santa Cruz Biotechnology), followed by incubation with an anti-mouse or rabbit IgG antibody conjugated with alkaline phosphatase (Santa Cruz Biotechnology), and visualized using BCIP/NBT kit (Nacalai Tesque, Kyoto, Japan).
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2

Molecular Profiling of Vascular Smooth Muscle

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Western blot was performed as previously described 22 (link). Briefly, lysates were prepared in RIPA buffer with protease inhibitor cocktail (Roche Applied Science, Germany). The concentrations of total proteins were measured by BCA protein assay (ThermoFisher Scientific, USA). Total lysates were loaded on SDS-PAGE, electrotransfered into nitrocellulose membrane. The primary antibodies against SM-MHC (Biomedical technology, BT-562), SM22α (Abcam, ab14106), Osterix (Abcam, ab94744), Alkaline Phosphatase (Santa Cruz, sc-137213), p-Smad 1/5/8 (Cell signaling, 9511s), Smad (Santa Cruz, sc-7153) and horseradish peroxidase-coupled secondary antibodies were used. The signals were visualized using ECL reagents (ThermoFisher Scientific, USA). The density of protein expression was quantified by using Image J.
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3

Antibody Characterization for PtrHB4 Protein

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An N‐terminal‐specific peptide of PtrHB4 (SKDKHMDSSKYVRY) was synthesized and injected into rabbits to raise antibodies (Abmart, Shanghai, China) (Figure S1b). Rabbit serum was collected and purified using protein‐A/G Sepharose. The purified antibodies were diluted into a concentration of 1 μg/μL for later use. The N‐terminal 150 amino acids length of PtrHB4 protein was cloned into pET28 vector and then expressed in E. coli. (BL21). Total proteins of cell lysate after IPTG induction were separated by SDS‐PAGE to examination expression of protein (Figure S1c). Western blot was performed using total proteins of cell lysate and from shoot tip of wild type plants against PtrHB4 antibody (diluted at 1 : 1000) to analysis antibody specificity according to the previous protocol (Figure S1d and e) (Song et al., 2010). The secondary antibodies (linked with alkaline phosphatase, Santa Cruz, CA) were diluted in 1 : 5000. The shoot tip and internodes of wild plants were embedded and sliced into 10‐μm‐thick sections for immunolocalization according to the previous protocol (Song et al., 2010). The first antibodies were diluted in 1 : 200. The secondary antibodies were diluted in 1 : 1000. After colour development, the sections were gradually dehydrated with alcohols, cleared with xylene and observed under an OLYMPUS BX51 light microscope (Olympus, NY).
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4

Western Blot Analysis of VEGF Expression

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Muscles were cut into pieces and homogenized mechanically for 10 min (170 rpm). After
determination of protein concentration, 100 µg protein was separated by sodium
dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and the proteins were
transferred onto polyvinylidene difluoride (PVDF) membranes. After the membranes were
washed with PBS four times, they were incubated in blocking solution consisting of 5%
skimmed milk powder in Tris-buffered saline with Tween 20 (TBS-T) for 60 min. The
membranes were then incubated with rabbit anti-human bFGF (diluted 1:3000, Santa Cruz
Biotechnology), rabbit anti-rat VEGF (diluted 1:1000; Santa Cruz Biotechnology), or
rabbit anti-rat β-actin antibodies (diluted 1:500; Sigma, USA) for 60 min. After
washing with PBS 4 times, the membranes were incubated with horseradish
peroxidase-conjugated goat anti-rabbit secondary antibodies (diluted 1:1000; Santa
Cruz Biotechnology) at room temperature for 60 min. After washing in PBS,
visualization was performed with alkaline phosphatase (Santa Cruz Biotechnology). The
ImageJ analysis software (National Institutes of Health, USA) was used to detect the
absorbance of VEGF bands, which were normalized to values obtained for actin to
determine relative VEGF expression.
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5

Immunohistochemical Analysis of Kidney Tissue

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The kidneys were dissected from the mice, fixed in 10% buffered formalin for 24 h, embedded in paraffin and were cut into 5 μm slices to make tissue slides. After deparrafinization followed by heat-induced antigen retrieval, slides were incubated with primary antibodies against Annexin-II (1:100, Santa Cruz Biotechnology, Dallas, TX, USA), CD63 (1:100, Santa Cruz Biotechnology, Dallas, TX, USA) and alkaline phosphatase (1:100, Santa Cruz Biotechnology, Dallas, TX, USA) overnight at 4 °C, and then incubated with biotinylated secondary antibodies and a streptavidin peroxidase complex (PK-7800, Vector Laboratories, Burlingame, CA, USA). Then slides were incubated with DAB and counterstained with hematoxylin. Followed by washing, dehydration, and finally slides were mounted with permount DPX and observed under microscopy as described previously [27 (link)]. The area percentage of the positive staining was calculated with Image Pro Plus 6.0 software [27 (link)].
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6

Immunohistochemical Analysis of Kidney Tissue

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The kidneys were dissected from the mice, fixed in 10% buffered formalin for 24 h, embedded in paraffin and were cut into 5 μm slices to make tissue slides. After deparrafinization followed by heat-induced antigen retrieval, slides were incubated with primary antibodies against Annexin-II (1:100, Santa Cruz Biotechnology, Dallas, TX, USA), CD63 (1:100, Santa Cruz Biotechnology, Dallas, TX, USA) and alkaline phosphatase (1:100, Santa Cruz Biotechnology, Dallas, TX, USA) overnight at 4 °C, and then incubated with biotinylated secondary antibodies and a streptavidin peroxidase complex (PK-7800, Vector Laboratories, Burlingame, CA, USA). Then slides were incubated with DAB and counterstained with hematoxylin. Followed by washing, dehydration, and finally slides were mounted with permount DPX and observed under microscopy as described previously [27 (link)]. The area percentage of the positive staining was calculated with Image Pro Plus 6.0 software [27 (link)].
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7

Antibody Characterization Protocol

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The following primary antibodies were used: rabbit anti-P2 27 (link) , rabbit anti-P3 7 rabbit anti-P6 9 (link) , rat anti-P6 (directed against a peptide and prepared by Eurogentec), monoclonal mouse anti-α-tubulin DM1A 28 (link) , and rabbit anti-P4 (Loewe). Alexa 488 and 594 (Thermo Fisher Scientific) and alkaline phosphatase (Santa Cruz) conjugates of secondary antibodies were used for immunofluorescence and Western blot analyses, respectively.
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