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Hepes buffered saline

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HEPES buffered saline is a laboratory reagent used to maintain a stable pH environment in aqueous solutions. It consists of a saline solution with HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) as the pH buffer. The buffer helps to maintain a physiological pH range, typically between 7.2 to 7.6, making it suitable for various cell culture and biological applications.

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31 protocols using hepes buffered saline

1

Endoscopic Birefringence Imaging of Airway

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Swine lungs were obtained from the Massachusetts General Hospital Knight Surgical Labs within 1–2 hours of sacrifice. Seventeen airway segments ranging in diameter from 3–7 mm and in length from 1–2 cm were imaged using the endoscopic birefringence microscopy platform. Freshly excised canine lungs were obtained from Boston Scientific Corporation, where they were immersed in HEPES buffered saline (Sigma Aldrich) and shipped to our laboratory overnight. Nineteen canine airway segments, ranging in diameter from 2–5 mm and a length of 1–2 cm were also imaged.
To prepare the segments for imaging, they were dissected from the lung and placed on cotton gauze. A saline flush was then performed to clear the airway of any blood that was present as a result of the dissection and the imaging catheter was placed within the airway segment. The imaging catheter pullback rate for all of the excised airway segments was 0.5 mm/s, corresponding to an image-to-image pitch of approximately 15 μm.
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2

Isolation and Culture of Sensory Neurons

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DRGs were dissected from adult TrpV1-Cre::tdTomato mice
(12–13 weeks) into Hank’s balanced salt solution (HBSS) (Life
Technologies). DRG were dissociated in 1 mg ml−1 collagenase A plus 2.4
U ml−1 dispase II (enzymes, Roche Applied Sciences) in HEPES-buffered
saline (Sigma) for 90 min at 37 °C and then triturated down to single cell level
using glass Pasteur pipettes of decreasing size. DRGs were the centrifuged over a
10% BSA gradient and plated on laminin-coated cell culture dishes (Sigma). DRGs
were cultured 24 hours in B27-supplemented neurobasal-A medium plus 50 ng/ml NGF
(Invitrogen), 2 ng/ml GDNF (Sigma), 10uM arabinocytidine (Sigma) and
penicillin/streptomycin (Life Technologies).
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3

Simultaneous Measurement of Cytosolic Ca2+ and pH

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Cytosolic Ca2+ and pH were measured independently using the fluorescent ratiometric indicators Fura-2 and BCECF, respectively. All experiments were performed in HEPES-buffered saline (HBS) comprising 1.25 mM KH2PO4, 2 mM CaCl2, 2 mM MgSO4, 3 mM KCl, 156 mM NaCl, 10 mM glucose and 10 mM HEPES (pH 7.4; all from Sigma-Aldrich). For measurement of Ca2+, cells were incubated with Fura-2 AM (2.5 µM) and 0.005% (v/v) pluronic acid (from Invitrogen) for 1 h in HBS. Fura-2 was excited at 340/380 nm and emitted fluorescence was captured using a 440 nm long pass filter and a 20× objective. For the measurement of pH, cells were incubated with BCECF-AM (5 µM) and 0.005% v/v pluronic acid (Invitrogen) for 30 min in HBS. BCECF was excited at 490/440 nm and emitted fluorescence was captured using a 515 nm long pass filter and a 20× objective.
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4

CGRP Release Assay in Mouse DRGs

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For the CGRP release assay, DRGs were dissected from C57Bl6/J mice into Hank’s balanced salt solution, incubated for 90 min at 37°C with 1 mg/ml collagenase A and 2.4 U /ml dispase II (Roche Applied Sciences) in HEPES-buffered saline (Sigma), and then mechanically triturated using glass Pasteur pipettes. DRGs were then centrifuged over a 10% BSA gradient and plated on laminin-coated 96 well plates at approximately 5,000 cells per well. A plate was prepared from each of two mice, each plate with DRGs in 10 wells. DRGs were cultured 48 hr before conducting a CGRP release assay in B27-supplemented neurobasal-A medium plus 50 ng/ml NGF, 2 ng/ml GDNF, 10 µM arabinocytidine and penicillin/streptomycin. The DRG neurons were exposed to 50 mM KCl with vehicle (2 wells of each plate), 50 mM KCl in the presence of 30 µM NNCB-2 (two wells/plate), or 50 mM KCl in the presence of 30 µM CNCB-2 (four wells/plate), with two wells/plate serving as controls with no KCl depolarization (4 mM KCl), for 10 min at 37°C. The supernatants were collected and analyzed using the Rat CGRP Enzyme Immunoassay Kit (Bertin Pharma/Cayman Chemical, #589001). Plates were read at 405 nm for 0.1 s on a Wallac Victor 1420 Multilabel Counter (Perkin Elmer) and data was analyzed using GraphPad Prism. Data are shown as raw values of absorbance and bars and error bars indicate mean ± SEM.
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5

Generation of Zap70 Transfectant Cell Lines

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To generate stable transfectants expressing Zap70wt or Zap70C564A, P116 cells were transfected with 5–30 µg of pPB[Exp]-Puro-EF1A>hZAP70/T2A/EGFP and 5 μg of pEF_hyPBase. For transient transfections of P116 cells, we used 5–30 µg of the pEYFP-N1-hZap70 vector. DNA electroporation of P116 cells was performed using the Gene Pulser II System (BIORAD) as previously described [16 (link)]. The transfected cells were cultured in an RPMI1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin. A total of 0.5 μg/mL of puromycin (Gibco, Waltham, MA, USA) was added for the generation of stable transfectants, which were additionally sorted with the Aria Cell Sorter 3 (BD Bioscience) and afterwards maintained in RPMI supplemented with 10% FBS, 1% penicillin/streptomycin, and 0.1% Ciprobay.
For the transfection of HEK293T cells, 1 × 106 cells were seeded onto 6-well tissue culture plates one day before transfection. Separately, a mixture was prepared containing 300 μL of 250 mM CaCl2 and 10 μg of pEYFP-N1-hZap70, which was added dropwise under constant agitation to 300 μL of HEPES buffered saline (Sigma-Aldrich). After incubation for 45 min at RT, 3 mL of DMEM (PAN Biotech, Aidenbach, Germany) were added to the mixture, which was subsequently carefully pipetted into the well containing the cells. Cells were incubated in the presence of a transfection medium for 24 h.
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6

Lentiviral Particle Production and Titration

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Lentivector particles were produced using the CaCl2 method based by tri-transfection with the plasmids pCMV-dR8.91 and pCMV-VSVG, CaCl2 and Hepes Buffered Saline (Sigma-Aldrich, Saint-Quentin-Fallavier, France), into HEK-293FT cells. Viral supernatants were harvested 48 hr after transfection, passed through 0.45 μm PVDF filters (Dominique Dutscher SAS, Brumath, France), and stored in aliquots at –80 °C until use. Viral production titers were assessed on HT1080 cells with serial dilutions of a lentivector expressing GFP and scored for green fluorescent protein (GFP) expression by flow cytometry analysis on a BD FACSVerse (BD Biosciences, Le Pont de Claix, France).
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7

Characterization of 12F6 Antibody

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The 12F6 antibody was prepared and characterized as previously described27 (link),32 (link),45 . Bovine serum albumin (BSA), goat anti-mouse IgG polyclonal antibody, tetrachloroauric acid (HAuCl4), trisodium citrate, Tween 20, sucrose and the reagents used to prepare HEPES-buffered saline (HBS: NaCl 137 mM, KCl 3 mM and HEPES 10 mM; pH 7.4) were purchased from Sigma Aldrich. Analytical grade nitric acid was purchased from Fisher Scientific. The U(VI) stock solution was purchased from Perkin Elmer and the chelator, 2,9-dicarboxyl-1,10-phenanthroline (DCP) was purchased from Alpha Aesar. Cellulose membranes (CFSP001700), glass fiber (GFCP00080000), nitrocellulose membranes (HF180), and adhesive laminated cards were purchased from Millipore.
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8

Quantifying Mitochondrial Metabolism in Cells

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Cells were treated with 50 mM etomoxir and/or 200 nM INK128 for 48 h as described in Results. Cells were trypsinized and plated on Matrigel (Sigma-Aldrich, CLS356237) pre-coated Ibidi µ-Slide 8 Well slides (Ibidi, 80821). After 30 min of attachment, cells were stained for 1 h with SPY650-DNA (SpiroChrome, SC501) in culture medium with inhibitors at 37 °C, washed twice with HEPES-buffered saline (Sigma-Aldrich, 40010) and stained for 2 h with 20 µM FAOBlue (DiagnoCine, FNK-FDV-0033) in DMEM with inhibitors at 37 °C in 20% O2 and 5% CO2. Cells were washed once with HEPES-buffered saline and imaged with 200 µl HEPES-buffered saline. Imaging was done on a Zeiss Plan-Apochromat 20×/0.8 objective on the Zeiss LSM880 Airy microscope using longitudinal-section magnetic mode. Images were processed using Fiji ImageJ2 (version 2.3.0) and quantified using CellProfiler (version 4.2.1).
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9

Isolation and Culture of Murine DRG Neurons

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Primary lumber dorsal root ganglia (DRG, segments T7-L6) from adult mice (7–12 weeks) were dissected into neurobasal-A medium (Life Technologies), dissociated in 1 mg/ml collagenase A plus 2.4 U/ml dispase II (enzymes, Roche Applied Sciences) in HEPES-buffered saline (Sigma) for 70 min at 37°c. After trituration with glass Pasteur pipettes of decreasing size, DRG cells were centrifuged over a 10% BSA gradient, plated on laminin-coated cell culture dishes in B27 supplemented neurobasal-A medium plus 50 ng/ml nerve growth factor (NGF) plus penicillin/streptomycin (Life Technologies).
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10

Targeted Genome Editing in Mouse Embryonic Stem Cells

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All experiments used the E14Tg2a.4 40 (link) male mouse ES cell line, which has a 36 kb X chromosome deletion that removes the first two exons of the Hprt gene. Cells were grown under feeder free conditions on gelatin coated plates and fed standard ES cell medium: Knockout DMEM (Life Technologies) containing 15% fetal bovine serum (HyClone), 2 mM L-glutamine (Life Technologies), 0.1 mM nonessential amino acids (Life Technologies), 0.05 mM 2-mercaptoethanol (Sigma), 1,000 U/mL ESGRO® LIF (Millipore), and penicillin-streptomycin. Cells were fed daily. Approximately 20 ug of linearized plasmid DNA was transfected into 1–1.5×107 ES cells in 0.8 mL HEPES buffered saline (Sigma-Aldrich) using a Gene Pulser Xcell™ (Bio-Rad) set to 250 V and 500 μF. Ten such transfections were performed for each library. Correctly targeted cells were selected by the addition of Hypoxanthine-aminopterin-thymidine (HAT) Supplement (Life Technologies) to the ES cell medium for 3–10 days, beginning 24 hours after transfection. Following HAT selection, cells were fed ES cell medium containing 1× HT supplement (Life Technologies) for two days. Cells from the same library were pooled together and expanded on fresh plates prior to sorting.
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