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10 protocols using 100 mm plates

1

Culturing Breast Cancer and Normal Cells

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Human breast cancer cell line (MCF-7 and MDA-MB-231) and normal human breast epithelial cell (MCF-10A) were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). MCF-7 and MDA-MB-231 cells were cultured in Dulbecco’s Modified Eagle Medium (Gibco, San Diego, CA, USA), MCF-10A cells were cultured in Mammary Epithelial Cell Growth Medium with supplements: BPE, hEGF, Insulin, Hydrocortisone, GA-1000 (Lonza, Basel, Switzerland). All medias were complemented by 10% of fetal bovine serum (FBS) and 1% of antibiotics: penicillin/streptomycin (both Gibco). The cells were maintained in an incubator that provides optimal growth conditions for the cell culture: 5% CO2, 37 °C, and humidity in a range of 90−95%. The cells were cultured in 100 mm plates (Sarstedt, Newton, NC, USA). Subsequently after obtaining a subconfluent cell culture, the cells were detached with 0.05% trypsin and 0.02% EDTA phosphate buffered saline without calcium and magnesium (Gibco). Then, utilizing a hemocytometer, the number of cells was quantified and seeded at a density of 5 x 105 cells per well in six-well plates (“Nunc”) in 2 mL of the growth medium (Dulbecco’s Modified Eagle Medium or Mammary Epithelial Cell Growth Medium, respectively). In the present study, cells that obtained 80% of confluence were used.
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2

Differentiation and Characterization of 1C11 Serotonin Neurons

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1C115-HT cell culture was performed as described previously(82 (link)). Briefly, undifferentiated 1C11 cells were kept on 100 mm plates (Sarstedt) in DMEM Glutamax with 10% fetal bovine serum, 1% non-essential amino acids, 1% penicillin/streptomycin, and 1% L-glutamine (all media components by Life Technologies) at 37°C and 5% CO2. For differentiation to serotonin neuron-like cells (1C115-HT) 10.000 cells were transferred to 8-well imaging slides (Ibidi). Then, culture medium was supplemented with 1 mM dibutyryl cAMP and 0.05% cyclohexanecarboxylic acid for 4 days (media supplements by Sigma Aldrich). Treatment conditions: For determination of SERT cell surface density, medium was supplemented with 15 mM KCl and/or 1 μM escitalopram. For ASP+ live cell imaging, cells were transferred to FSCV buffer containing 50 μM ASP and/or 1 μM escitalopram and/or serotonin (0.1 or 1 μM). Electrical stimulation was applied after perfusing the imaging slides with ASP+-containing FSCV buffer. Dye-free buffer was applied 1 min after electrical stimulation before image acquisition.
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3

Culturing Human Breast Cell Lines

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Human breast cancer cell lines (MCF-7 and MDA-MB-231) and normal human breast epithelial cells (MCF-10A) were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). MCF-7 and MDA-MB-231 cells were cultured in Dulbecco’s modified eagle medium (Gibco, San Diego, CA, USA), MCF-10A cells were cultured in mammary epithelial cell growth medium with supplements: BPE, hEGF, insulin, hydrocortisone, GA-1000 (Lonza, Basel, Switzerland). All media were complemented by 10% of fetal bovine serum (FBS) and 1% of antibiotics: penicillin and streptomycin (both Gibco, San Diego, CA, USA). The cells were maintained in an incubator that provides the optimal growth conditions for the cell culture: 5% CO2, 37 °C, and humidity in a range of 90‒95%. The cells were cultured in 100 mm plates (Sarstedt, Newton, NC, USA). Subsequently after obtaining a subconfluent cell culture, the cells were detached with 0.05% trypsin with 0.02% EDTA (Gibco, San Diego, CA, USA). Then, utilizing a Scepter 3.0 handheld automated cell counter (Milipore, Burlington, MA, USA), the number of cells was quantified and seeded at a density of 5 × 105 cells per well in six-well plates (“Nunc”) in 2 mL of the growth medium (Dulbecco’s modified eagle medium or mammary epithelial cell growth medium, respectively). In the present study, cells that obtained 80% of confluence were used.
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4

Anoikis Resistance Assay for Cancer Cells

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Anoikis resistance was determined by incubating cancer cells on low attachment, hydrophobic 100 mm-plates (#82.1472.001, Sarstedt) either in a static or dynamic mode, the latter being obtained by slight shaking of the plate within the incubator. Cells under suspension after 24 h incubation were collected by centrifugation and adherent cells were detached with trypsin (# 25300-054, Life Technologies) for cell counting (Cellometer, Auto T4 Bioscience).
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5

Western Blot Analysis of COX-1 and COX-2

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Cell lines
were grown in 100
mm plates (Sarstedt) to 50% confluence and were harvested by scraping
into PBS. The cells were centrifuged at 4 °C, 200g for 5 min. The pellets were resuspended in 200 μL of M-PER
(Pierce) and frozen at −80 °C. Cell lysates (20 μg)
or COX-1/-2 (5 ng, positive control) were loaded onto a 4–20%
10-well, 50 μL, Mini-PROTEAN TGX gel (Bio-Rad). Following electrophoresis
and transfer, the blot was incubated overnight with a murine monoclonal
antibody raised against human COX-1 or COX-2 (Santa Cruz) at 1:200
dilution. The presence of the antibody was detected by treatment with
IRDye 680LT donkey antimouse IgG (1:10 000, LI-COR).
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6

Serotonergic Differentiation of 1C11 Cells

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1C11 cells were cultured according to standard protocol.15, 16 Briefly, 1C11 cells were kept on 100 mm plates (Sarstedt) in DMEM Glutamax with 10% fetal bovine serum, 1% non‐essential amino acids, 1% penicillin/streptomycin, and 1% L‐glutamine (all Life Technologies) at 37°C and 5% CO2. For differentiation to serotonergic 1C11 cells (1C115‐HT), 40,000 cells were transferred to a 3.5 cm plate (Sarstedt) containing 3 coverslips or slide chambers (Ibidi) for live cell imaging. Then, culture medium was supplemented with 1 mM dibutyryl cyclic adenosine monophosphate (cAMP) and 0.05% cyclohexanecarboxylic acid for 4 days. On day 4, 1C115‐HT were shown to display a complete 5‐HT metabolism.16 Fetal bovine serum in the medium, which contains 5‐HT, does not impact differentiation to a complete 5‐HT phenotype, but reduces 5‐HT synthesis, content and uptake by activation of 5‐HT2B and 5‐HT1B/D autoreceptors.16 As we did not quantify 5‐HT synthesis, content or uptake, this did not impact on our experiments. Additionally, medium was removed, and cells were washed three times in 1x phosphate‐buffered saline (PBS) prior to all experiments to remove medium residues and avoid any bias caused by 5‐HT in the medium. For each treatment, a randomized three‐digit code was applied before image acquisition. Image acquisition and analysis were performed under blinded conditions.
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7

Breast Cancer Cell Lines Analysis

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Two breast cancer cell lines (MCF-7 and MDA-MB-231) and fibroblasts as normal cell lines, which were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA), were used to investigate the effects of the novel synthesized compounds. The cells were cultured in DMEM (Corning, Kennebunk, ME, USA), supplemented with FetalBovine Serum (Eurx, Gdansk, Poland) at concentration 10% and penicillin/streptomycin at 1%. Cells were cultured on 100 mm plates (Sarstedt, Newton, NC, USA) and then kept in an incubator that provided optimal growth conditions (5% CO2, temperature: 37 °C, humidity at 90–95% level). After reaching 80% confluence, cells were detached from the bottom of the plate using 0.05% trypsin supplemented with 0.2% EDTA (Gibco, San Diego, CA, USA). Then, using a hemocytometer, the number of cells was quantified and seeded at density 5 × 105 cells per well in six-well plates (Sarstedt, Newton, NC, USA) in 2 mL of DMEM. In this research, cells that obtained 80% of confluency were used.
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8

Culturing Human Colorectal Cancer Cell Lines

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Human colorectal adenocarcinoma cell line DLD-1 (CCL-221) and HT-29 (HTB-38) was purchased from the American Type Culture Collection (ATCC, Manassas, VA). The DLD-1 line histologically is the most similar to a primary tumour. Line HT-29, in turn, is used to assess multidrug resistance, absorption of nutrients, and chemically induced differentiation of enterocytes. Cells (passage number range of 6–8) were cultured in RPMI 1640 medium (Sigma, St. Louis, MO) and McCoy’s 5a medium (ATCC), respectively, complemented with 10% of foetal bovine serum (FBS) and 1% of antibiotics: penicillin/streptomycin. The cells were maintained in an incubator, which provides optimal growth conditions for cell culture: 5% CO2, 37 °C, and humidity in a range of 90–95%. The cells were cultured in 100 mm plates (Sarstedt, Newton, NC). Subsequently, after obtaining a subconfluent cell culture, the cells were detached with 0.05% trypsin and 0.02% EDTA phosphate buffered saline without calcium and magnesium (Corning, Corning, NY). Then, utilising a haemocytometer, the number of cells was quantified and seeded at a density of 5 × 105 cells per well in six-well plates (“Nunc”) in 2 mL of the growth medium (RPMI 1640 and McCoy’s 5a). In the present study, cells that obtained 80% of confluency were used.
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9

Cultivation and Characterization of Breast Cell Lines

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Human breast cancer cell lines (MCF-7 and MDA-MB-231) and normal human breast epithelial cells (MCF-10A) were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). MCF-7 and MDA-MB-231 cells were cultured in Dulbecco’s Modified Eagle Medium (Gibco, San Diego, CA, USA), MCF-10A cells were cultured in Mammary Epithelial Cell Growth Medium with supplements: BPE, hEGF, insulin, hydrocortisone, GA-1000 (Lonza, Basel, Switzerland). All media were complemented by 10% of fetal bovine serum (FBS) and 1% of antibiotics: penicillin and streptomycin (both Gibco, San Diego, CA, USA). The cells were maintained in an incubator that provides the optimal growth conditions for the cell culture: 5% CO2, 37 °C, and humidity in a range of 90–95%. The cells were cultured in 100 mm plates (Sarstedt, Newton, NC, USA). Subsequently after obtaining a subconfluent cell culture, the cells were detached with 0.05% trypsin with 0.02% EDTA (Gibco, San Diego, CA, USA). Then, utilizing a Scepter 3.0 handheld automated cell counter (Milipore, Burlington, MA, USA), the number of cells was quantified and seeded at a density of 5 × 105 cells per well in six-well plates (“Nunc”) in 2 mL of the growth medium (Dulbecco’s Modified Eagle Medium or Mammary Epithelial Cell Growth Medium, respectively). In the present study, cells that obtained 80% of confluence were used.
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10

1C11 Serotonin Neuron Differentiation

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1C11 5-HT cell culture was performed as described previously (82) . Briefly, undifferentiated 1C11 cells were kept on 100 mm plates (Sarstedt) in DMEM Glutamax with 10% fetal bovine serum, 1% non-essential amino acids, 1% penicillin/streptomycin, and 1% L-glutamine (all media components by Life Technologies) at 37 °C and 5% CO 2 . For differentiation to serotonin neuron-like cells (1C11 5-HT ) 10.000 cells were transferred to 8-well imaging slides (Ibidi). Then, culture medium was supplemented with 1 mM dibutyryl cAMP and 0.05% cyclohexanecarboxylic acid for 4 days (media supplements by Sigma Aldrich). Treatment conditions: For determination of SERT cell surface density, medium was supplemented with 15 mM KCl and/or 1 μM escitalopram. For ASP + live cell imaging, cells were transferred to FSCV buffer containing 50 μM ASP and/or 1 μM escitalopram and/or serotonin (0.1 or 1 μM). Electrical stimulation was applied after perfusing the imaging slides with ASP + -containing FSCV buffer. Dye-free buffer was applied 1 min after electrical stimulation before image acquisition.
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