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3 protocols using anti cathepsin b

1

Lysosomal Dysfunction and Oxidative Stress Assay

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All reagents were obtained from Sigma unless otherwise specified. LysoSensor and SYBR Green PCR Master Mix were purchased from Life Technologies Inc. (Grand Island, NY). HNE and bafilomycin A1 (Baf) was from Cayman Chemical Company (Ann Arbor, MI). Rapamycin and wortmannin were purchased from Sigma Chemical Company (St. Louis, MO). DQ-BSA was from Thermo Fisher Scientific. Anti-HNE antibody was from Alpha Diagnostic (San Antonio, TX; catalog #HNE13-M). Cathepsin B and cathepsin D activity assay kits, anti-SQSTM1/p62, anti-LAMP2a (catalog #ab18528) and anti- cathepsin B (catalog #ab58802) antibodies were from Abcam (Cambridge, MA). Anti-cleaved caspase-3 (catalog #9661)) and anti-cathepsin D (catalog # 2284) antibodies were from Cell Signaling Technology (Danvers, MA). Anti-LC3 (catalog #NB100-2220), and Anti-Hsc70 (catalog #NB120-2788) antibodies were from Novus Biologicals (Littleton, CO). Anti mono- and polyubiquitinylated conjugated antibody was from Enzo Life Sciences (Farmingdale, NY; catalog #PW8810). Anti K48-linked and K63-linked polyubiquitin antibodies (catalog number 05-1307 and 05-1308, respectively) were from EMD Millipore (Billerica, MA). MTS assay kit was from Promega Life Sciences (Madison, WI). LDH assay kit was from Roche Diagnostics (Indianapolis, IN).
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2

Visualizing Cathepsins in ECTV-Infected Cells

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JAWS II and GM-BM cells were seeded on coverslips placed in a 24-well plate at a density of 1.5 × 105 cells per well. Cells were left uninfected or were treated with ECTV for 60 min. at 37 °C. After 4, 12 and 24 h, cells were fixed with 4% paraformaldehyde (PFA, Sigma-Aldrich, St Louis, MO, USA) and permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) in PBS. Next, JAWS II and GM-BM cells were blocked with 3% bovine serum albumin (BSA, Sigma-Aldrich) in 0.1% Triton X-100 and incubated for 45 min. with anti-cathepsin B, anti-cathepsin L (both from Abcam, Cambridge, MA, USA) and anti-cystatin B (Thermo Fisher Scientific) primary antibodies. After washing with 0.1% Triton X-100 in PBS, cells were incubated with secondary anti-mouse or anti-rabbit antibodies conjugated with rhodamine Red-X (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA, USA) diluted in blocking solution for 1 h. ECTV antigens were stained with FITC-conjugated polyclonal antibodies for 1 h. Viral and nuclear DNA was stained with Hoechst 33342 (Sigma-Aldrich) solution for 10 min. in the dark. Slides were mounted in ProLong Gold Antifade Reagent (Life Technologies). Images were captured using Olympus BX60 fluorescence microscope and analyzed with Cell^F software (Soft Imaging System, Olympus, Tokyo, Japan) and ImageJ (NIH, Bathesda, MD, USA).
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3

Evaluation of Autophagy Regulatory Factors

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MG132 and lactacystin were obtained from Calbiochem (Darmstadt, Germany; 474790 and 426100). Chloroquine, 3MA, 3NP, doxorubicin, cycloheximide and etoposide were obtained from Sigma-Aldrich China (Shanghai, China; C6628, M9281, N5636, D1515, N11534 and E1383). The antibodies used were as follows: anti-DRAM1 (Abcam, Cambridge, MA, USA; ab58807), anti-BAX (Abcam; ab5714), anti-Bcl-2 (Santa Cruz, Dallas, TX, USA; sc-7382), anti-Atg5 (Cell Signaling, Beverly, MA, USA; 2630), anti-caspase-3 (Santa Cruz; sc-271028), anti-cathepsin B (Abcam; ab49231), anti-BID (Cell Signaling; 2002), anti-Lamp2 (Santa Cruz; sc-20004), anti-cytochrome c (Santa Cruz; sc-7159), anti-HSP60 (Santa Cruz; sc-65568), anti-p62 (Abcam; ab96134), anti-LC3 (MBL, Nagoya, Japan; PD015 ) and anti-β-actin (Santa Cruz; sc-47778).
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