The largest database of trusted experimental protocols

11 protocols using anti oct4 antibody

1

Blastocyst Embryo Immunolabeling

Check if the same lab product or an alternative is used in the 5 most similar protocols
ESCs were dissociated into single-cell suspensions, and 5–10 cells were microinjected under the zona pellucida of 6- to 8-cell stage rabbit embryos (E1.5). After 48 hr of in vitro culture in RDH medium, blastocyst stage embryos (E3.5) were treated with pronase to digest the mucus coat. They were further cultured in RDH medium for 48 hr until they reached the late-blastocyst stage (E5.5) prior to immunostaining with AF488-conjugated rabbit anti-GFP antibody or Anti-Oct4 antibody (Santa Cruz biotechnology, sc-9081). Cells were immunolabeled with Alexa Fluor 647-conjugated SSEA1 (Santa Cruz, sc-21702) and Alexa Fluor 647-conjugated SSEA4 (Santa Cruz, sc-21704) antibodies.
+ Open protocol
+ Expand
2

Microarray Analysis of Mouse Primordial Germ Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Microarray analysis of purified mouse PGCs was performed as described44 (link). Expression levels of ovo-like genes and other germline markers were extracted from the microarray data. Microarray data were deposited in GEO under Accession No. GSE82020.
To count PGCs in mouse embryos, we used null-mutant mice lacking Ovol2 exon 3, which encodes the first and second of four zinc-finger domains35 (link). Oct4-positive PGCs in mouse embryos were counted as follows. Embryos of early somite stage (E8.0–8.5) were dissected and immunostained with anti-OCT4 antibody (Santa Cruz Biotechnology) as described45 (link). Z-stack confocal images were taken from each embryo using a Zeiss 510, and optical slices were analyzed using the ImageJ software. OCT4-positive PGCs were detected, and their X-Y positions in each section were recorded. PGCs with the same (or almost the same) X-Y positions were considered to be identical, and total PGCs were counted by manual inspection of all optical sections.
All mouse experiments conformed to the Guide for the Care and Use of Laboratory Animals and were approved by the Institutional Committee of Laboratory Animal Experimentation of RIKEN BioResource Center.
+ Open protocol
+ Expand
3

Immunoblotting for Stem Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed and sonicated in RIPA buffer, following SDS-PAGE of lysates. Proteins were transferred to Hybond nitrocellulose membranes (Amersham, GE Healthcare) and immunoblotted with anti-OCT4 antibody (1∶1,000; sc-5279; Santa Cruz Biotechnology), anti-LIN28B antibody (1∶1,000; #4196, Cell signalling) and anti-GAPDH (1∶10,000; #4300, Ambion). After washing with PBST, secondary HRP-linked antibody ECL Mouse IgG, (1∶5,000; Amersham) were used and detected with enhanced ECL reagent (Amersham). Figure 4D, Chemiluminescent Detection Films (Roche) and CURIX 60 film developing machine (Agfa) was used to visualize ECL-activity. Figure 3B, ECL-activity was detected with a FUSION-FX7 Advance Chemiluminescent system (Peqlab).
+ Open protocol
+ Expand
4

Chromatin Immunoprecipitation of OCT4

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP analysis was performed according to the instructions provided in the EZ-ChIP Kit (Millipore). Chromatin was incubated overnight with anti-OCT4 antibody (Santa Cruz) or control rabbit IgG (Millipore). Precipitated DNA was further purified and amplified with PCR primers (Forwards: 5'-TGGCATAGCACTGAAAGG-3'; Reverse: 5'-CTGACTGGCAGTTGGTTG-3') surrounding the OCT4 binding site upstream of the ESRG gene.
+ Open protocol
+ Expand
5

Immunoprecipitation and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were incubated with the following antibodies: mouse IgG (sc-3877; Santa Cruz Biotechnology), anti-FLAG antibody (F1804; Sigma), and anti-OCT4 antibody (sc-5279; Santa Cruz Biotechnology). Immunoprecipitation was performed as described previously [39 (link)].
Western blotting was performed using the following antibodies: anti-GAPDH (sc-25778), anti-CHIP (sc-66830), anti-Nanog (sc-33759), anti-SOX2 (sc-20088), and anti-OCT4 antibodies (all purchased from Santa Cruz Biotechnology); anti-FLAG antibody (Sigma); and HRP-conjugated anti-Ub antibody (BML-PW0150; ENZO). Proteins of interest were detected using an ECL solution (Amersham Life Science) with LAS-3000 detector (Fujifilm), according to the manufacturer’s directions.
+ Open protocol
+ Expand
6

ChIP Assay for Oct4 Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
A ChIP assay was performed using the EZ-CHIP kit (Millipore, Bedford, MA, USA) as previously described [28 (link)]. Briefly, the cells were fixed using formaldehyde (1%), followed by sonication, alternating 30 s pulses 10 times in order to shear DNA to lengths between 500 and 1,000 bp. Then, anti-Oct4 antibody (Santa Cruz Biotechnology, Santa Cruz, CA, USA) was used to immunoprecipitate Oct4-bound DNA. The DNA was extracted and used for PCR. The primer sequences were 5′- AGGATCCCCCGCCGGAACAA-3′ (forward) and 5′-GAGTTCCCGCGTTGCCCCTC-3′ (reverse).
+ Open protocol
+ Expand
7

Immunofluorescence Staining and Visualization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Alkaline phosphatase staining was performed using the Vector Red substrate kit (Vector Labs). Immunostaining was done according to (Plath et al., 2003 (link)). Briefly, cells/tissues were fixed with 4% paraformaldehyde for 5 minutes and subsequently blocked with 1% BSA, 1% donkey serum and 0.5% Triton X-100. Following blocking, cells were incubated overnight with primary antibody at 4°C. Cells were then washed 3X with PBS and incubated with secondary antibody for 1 hour at room temp. Cells/tissues were then washed 3 times with PBS, mounted, and viewed with an inverted fluorescent scope. Antibodies used for this study were: anti-NANOG antibody (Abcam; ab80892), anti-SOX2 antibody (Santa Cruz; sc-17320), anti-GATA6 antibody (Cell signaling; #5851), anti-GFP antibody (Nobus; NB100-1614) and anti-OCT4 antibody (Santa Cruz; sc-5279).
+ Open protocol
+ Expand
8

Immunofluorescent Staining of Oct-4 in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells grown in standard culture dishes were rinsed with PBS, fixed with 4% paraformaldehyde (Merck), permeabilized with 0.1% Triton X-100 (Sigma-Aldrich) and blocked with 10% FCS in PBS. Cells were incubated with Anti Oct-4 antibody (Santa Cruz (Heidelberg, Germany) sc-5279, 1∶50) in blocking solution for 1 h at 4°C. Secondary antibody staining was performed for 45 min (goat anti-mouse-Alexa Fluor 594, Invitrogen), followed by DAPI staining (Sigma) for 5 min. Cells were covered by mounting medium (Invitrogen) and analyzed using a Nikon Eclipse TS 100.
+ Open protocol
+ Expand
9

Adipogenic and Chondrogenic Differentiation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dulbecco’s modified eagle’s medium (DMEM), fibronectin, leukocyte alkaline phosphatase kit, Oil red O, Safranin O, dexamethasone, iso butyl methyl xanthine, indomethacin, insulin, β- glycerophosphate and ascorbic acid were purchased from Sigma Aldrich (Steinheim, Germany). Tissue culture plastic plates and flasks were from BD biosciences (Heidelberg, Germany). Fluorescent conjugated anti-human antibodies were from BD biosciences. Anti-Oct4 antibody was from Santa Cruz. Fetal bovine serum (FBS), recombinant human BDNF, chondrogenic differentiation media, neurobasal media, neuronal supplements and Tetramethylrhodamine, ethyl ester (TMRE) were purchased from Thermofisher scientific (Paisley, UK).
+ Open protocol
+ Expand
10

Pluripotency Marker Expression Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antibodies used include: anti-6xHis antibody (Millipore, Cat# 05-949), anti-OCT4 antibody (Santa Cruz Biotechnology, Cat# sc-5279), anti-NANOG antibody (Cell Signaling Technology, Cat# 4903), anti-Lin28 antibody (Cell Signaling Technology, Cat# 3695), anti-phospho FGFR1 antibody (Life Technologies, Cat# 44-11406), anti-phospho FRS2α antibody (Cell Signaling Technology, Cat# 3861), anti-phospho ERK1/2 antibody (Abcam, Cat# ab4819), anti-Actin antibody (Sigma-Aldrich, Cat# A2066), Phalloidin-AlexaFluor488 (Life Technologies), secondary AlexaFluor568 conjugated antibodies (Life Technologies), AP-conjugated anti-mouse secondary antibody and AP-conjugated anti-rabbit secondary antibody (both from Abcam).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!