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5 protocols using cpt1a

1

HUVEC Protein Expression Analysis

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HUVEC were lysed in 50 mM Tris–HCl (pH 7.4) containing 150 mM NaCl (Sigma-Aldrich), 1% NP40 (Sigma-Aldrich), 0.25% sodium deoxycholate (Sigma-Aldrich), protease inhibitors (10 µg/mL Leupeptin, 10 µg/mL Aprotinin and 1 mM Phenylmethyl-Sulfonyl Fluoride, PMSF) (Sigma-Aldrich), and phosphatase inhibitors (1 mM sodium fluoride, 1 mM sodium vanadate, 5 mM sodium phosphate) (Sigma-Aldrich). Lysates (40 µg/lane) were separated by SDS-PAGE and transferred to nitrocellulose sheets. Western Blot analysis was performed using antibodies against OPA1, DRP1, LC3 B-I/-II, BECLIN (Cell Signalling, Euroclone, Pero, Italy), CYPD, CPT1A, GLUT1 (Thermo Fisher Scientific), BNIP3 (Sigma-Aldrich), p62 (Invitrogen, Carlsbad, CA, USA), ATGL, PLIN2 and mitochondrial oxidative phosphorylation complexes (OXPHOS) (Abcam, Cambridge, UK). Actin (Santa Cruz, Dallas, Texas, USA) was the control of equal loading. After washing, secondary antibodies labelled with horseradish peroxidase (GE Healthcare, Waukesha, WI, USA) were used. Immunoreactive proteins were detected with Clarity™ Western ECL substrate by ChemiDoc MP Imaging System (Bio-Rad). Densitometry of the bands was performed with ImageJ. The Western blots shown are representative and the densitometric analysis was performed calculating the ratio between the protein of interest and Actin on three independent experiments ± Standard Deviation (SD).
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2

Immunohistochemical Analysis of Spinal Cord

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Immunohistochemical peroxidase staining on the lumbar spinal cord was performed to evaluate morphological changes between genotypes and treatment groups. Tissue was processed as previously described20 (link),23 (link). The following primary antibodies were used: MBP 1:800 (Abcam, CAT# ab7349), GFAP 1:1000 (Agilent, CAT# Z033429-02), CPT1A 1:400 (ThermoFisher Scientific, CAT# PA5-69347), IBA-1 1:500 (Wako, CAT#013-27691), CHAT 1:400 (Merck Millipore, CAT#ab144p). The following secondary HRP-conjugated antibodies were used: Goat Anti-rat 1:500 (ThermoFisher Scientific, CAT# PA1-84708), and Goat Anti-rabbit 1:500 (Dako, CAT# P0448). The sections were imaged using a Leica microscope as previously described23 (link). All microscopy settings were kept identical during the entire acquisition process.
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3

Quantifying Liver Gene Expression

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Total RNA was isolated from mouse liver using TRIzol reagent (Bioline Reagents Ltd., London, UK), and RNA concentration was determined using the NanoDrop spectrophotometer (Thermo Fisher Scientific). Complementary DNA (cDNA) was synthesized using the High-Capacity cDNA Reverse Transcription Kit (Thermo Scientific) with 800 ng of RNA for each sample. RT-qPCR was performed using StepOne Plus Real-Time PCR system with Taqman PCR master mix (Thermo Scientific). The primers used in this study were: TXNIP (Hs00197750_m1), Hspa5 (alias Bip) (Mm00517691_m1), Eif2ak3 (alias Perk) (Mm00438700_m1), Atf6 (Mm01295319_m1), Ern1 (alias is Ire1) (Mm00470233_m1), Xbp1 (Mm00457357_m1), Cpt1a (Mm01231183_m1), Ppara (Mm00440939_m1), Acadvl (Mm00444293_m1), Acadl (Mm00599660_m1), and β-actin (Mm02619580_g1) (Thermo Scientific). The expression levels of the genes of interest were normalized against those of β-actin.
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4

Quantification of Metabolic Regulators in Tregs

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Tregs were sorted from the spleen and lymph nodes of naïve FoxP3-GFP mice. Total RNA was isolated by using TRIzol reagent (Life Technologies) and following manufacturer’s protocol. RNA (800 ng) was then converted to cDNA with ProtoScript II RT (New England BioLabs). Real-time PCR was performed using EagleTaq Universal Master Mix (Roche). Real-time PCR primers and probes were obtained from Applied Biosystems: Cpt1a (carnitine palmitoyltransferase 1a, liver, Mm01231183_m1), Hif1a (hypoxia inducible factor 1, alpha subunit, Mm00468869_m1), Hk2 (hexokinase 2, Mm00443385_m1), and Pfkp (phosphofructokinase, platelet, Mm00444792_m1). Delta-delta Ct (ΔΔCt) values were normalized to the housekeeping gene 18s ribosomal RNA (Life Technologies) and further normalized to the control group. Experiments were performed on an OneStepPlus 96 well instrument (Applied Biosystems).
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5

Gene Expression Analysis of Fatty Acid Metabolism

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Aliquots of the tissue samples were homogenized by Tissue Lyser (QIAGEN, Hilden, Germany) and the total RNA was extracted using RNeasy Mini kit (QIAGEN) according to the manufacturer’s instructions. Next, 2.0 μg of the isolated total RNA was used to synthesize cDNA with SuperScript VILO Mastermix (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. The synthesized cDNA solutions were diluted 5-fold by Tris-EDTA (TE) buffer (pH 8.0, NIPPON GENE Co., Ltd., Tokyo, Japan). Before the measurements, the cDNA solutions were further diluted 10-fold with MILLI-Q water (Millipore Corporation, Darmstadt, Germany) and were used for TaqMan probe-based semi quantitative-real time PCR. The mRNA levels of Acsl1, 3, and 5, Lcad, Cpt1a, and β-actin were measured in duplicate on a 7300 Real-Time PCR System (Applied Biosystems, Waltham, MA, USA) using TaqMan Gene Expression Master Mix (Applied Biosystems) according to the manufacturer’s instructions. The data analysis was performed by a calibration curve method using SDS software (Applied Biosystems) and the results were normalized to actb expressions.
The following primer and TaqMan probe mixtures were obtained from Applied Biosystems: Acsl1 (Rn00563137_m1), Acsl3 (Rn00589037_m1), Acsl5 (Rn00586013_m1), Lcad (Rn00563121_m1), Cpt1a (Rn00580702_m1), and Beta-actin (Rn00667869_m1).
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