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Alexa 488 conjugated goat antirat igg

Manufactured by Thermo Fisher Scientific
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Alexa Fluor 488-conjugated goat anti-rat IgG is a secondary antibody used to detect and visualize rat immunoglobulin G (IgG) in various immunoassays. The antibody is conjugated to the fluorescent dye Alexa Fluor 488, which emits green fluorescence upon excitation, allowing for sensitive detection of target proteins.

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8 protocols using alexa 488 conjugated goat antirat igg

1

Antibody Production and Characterization

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Rat mAb against mouse laminin α1 (5B7-H1), rat mAb against mouse laminin α5 (M5N8-C8), and rabbit polyclonal antibody (pAb) against Velcro (ACID/BASE coiled-coil) peptides were produced in previous studies (Manabe et al, 2008 (link); Sato-Nishiuchi et al, 2012 (link)). The following antibodies and reagents were obtained commercially: rat anti-laminin-γ1 mAb (Millipore); rabbit anti-laminin pAb, BSA, and heparin (Sigma-Aldrich); mouse anti-CDX2 mAb (Biocare); rabbit anti-OCT4 pAb (Santa Cruz Biotechnology); rat anti-integrin αV mAb (RMV-7), hamster anti-integrin β1 mAb (Ha2/5), and hamster anti-integrin β3 mAb (2C9.G2) (BD Biosciences); Alexa 488–conjugated goat antirabbit IgG, Alexa 546–conjugated goat antirat IgG, Alexa 405–conjugated goat antirabbit IgG, Alexa 488–conjugated goat antirat IgG, and Alexa 546–conjugated goat antimouse IgG (Invitrogen); bovine types I and IV collagens (Nippi Inc.); recombinant human FGF4 (Peprotech); and PermaFluor (Thermo Shandon). Mouse EHS laminin was prepared from a mouse EHS tumor as described (Murayama et al, 1996 (link)). Fibronectin was purified from human plasma by gelatin affinity chromatography as described (Sekiguchi & Hakomori, 1983 (link)).
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2

Immunofluorescence Staining of CD41 and Periostin

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Tissue sections were stained with rat anti-mouse CD41 antibody (catalog number 553847, BD Pharmingen, Mississauga, ON, Canada) followed by alexa 488-conjugated goat anti-rat IgG (catalog number A-11006, Invitrogen, ThermoFisher Scientific, Burlington, ON, Canada). Periostin was detected by immunofluorescence using a rabbit anti-periostin polyclonal antibody (catalog number ab92460, Abcam Inc., Toronto, ON, Canada) followed by alexa 488-conjugated goat anti-rabbit IgG (catalog number A-11008, Invitrogen, ThermoFisher Scientific, Burlington, ON, Canada). Sections were counterstained with DAPI to visualize nuclei. All images were acquired with a Zeiss Axiovert 200M inverted microscope with a 20 or 40x objective. CD41-positive coronary arteries were counted across five tissue sections. Results were expressed as the average number of CD41-positive coronary arteries per tissue section.
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3

Immunofluorescence Analysis of Tight Junction Proteins

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For immunofluorescence analysis, the following primary antibodies were used: rabbit anti‐ZO‐1 (1:100 dilution, Thermo Fisher, #61‐7300), rabbit anti‐claudin‐5 (1:400, Abcam, #ab53765), rabbit anti‐GFAP (1:500, DAKO, #Z0334), rat anti‐CD31 (clone Mec13.3, BD Biosciences), Pals1 (1:100, Merck, #7‐708), rat anti‐Crb3 (14F9, Abcam, ab180835), mouse anti‐E‐cadherin (1:200, BD Bioscience, #610181), and rabbit anti‐cleaved caspase‐3 (Asp175, 1:100 Cell Signaling, #9661). Secondary antibodies were 3 mg/ml Alexa 546‐conjugated goat anti‐rabbit IgG and 3 mg/ml Alexa 488‐conjugated goat anti‐rat IgG (all from Invitrogen). For Western blotting, rabbit anti‐MPDZ (1:500, Thermo Scientific, 42‐2700) and mouse anti‐beta actin (1:2,500, Sigma‐Aldrich #A5441) were used.
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4

Immunocytochemistry for HA-tagged Proteins

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Immunocytochemistry was performed as described previously [21 (link)]. For detection of HA-tagged proteins, we used rat monoclonal anti-HA antibody (clone 3F10; 1:1,000; Roche) and Alexa488-conjugated goat anti-rat IgG (Thermo Fisher Scientific) as the primary and secondary antibodies, respectively. Fluorescence was observed with a laser-scanning confocal fluorescence microscope (FV10i-DOC, Olympus).
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5

Immunostaining of RBL-2H3 cells

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Immunostaining of the resting and stimulated RBL-2H3 cells was performed as previously described36 (link). In some cases, disruption of the F-actin network was performed by incubation of cells in medium containing 1 μM LatB (Sigma-Aldrich) for 15 min prior to antigen stimulation or fixation. For staining of F-actin, the cells were incubated with 5 U/ml BODIPY FL PhallAcidin (Thermo Fischer Scientific) in PBS for 1 h after fixation, permeabilisation, and blocking. For immunostaining, Alexa488-conjugated goat anti-rat IgG and Alexa594-conjugated goat anti-mouse IgG antibodies (Thermo Fischer Scientific) were used as secondary antibodies. Stained cells were irradiated with a blue-beam (488 nm) from Argon ion laser and with a green-beam (543 nm) from He/Ne laser, and fluorescent images were acquired using a LSM510 meta/ConfoCor2 system (Carl Zeiss) equipped with the ×63 oil/1.4 NA (Fig. 1B, −Ag) and ×40 water/1.2 NA objectives (others), and with the FITC/Rhodamine (505–530 nm, > 560 nm) filter set. Co-localisation analyses were performed using Image J (Fiji). All images shown in this study are representative of at least 10 stained cells.
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6

Immunohistochemical Profiling of Neural Markers

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A mouse monoclonal antibody against GM2 ganglioside (GMB28; immunoglobulin M, 1:20) was kindly donated by Dr. Tai (Department of Tumor Immunity, The Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan). An anti-GFAP (Dako, Carpinteria, CA, USA, 1:1000), anti-Iba1 (Wako Pure Chemical Industries, Osaka, Japan, 1:500), anti-CD68 (clone FA-11, AbD Serotec Ltd., Oxford, UK, 1:100), anti-NeuN (EMD Millipore, Billerica, MA, 1;1000) and anti-S100ß (GeneTex, Irvine, CA, 1:100) were used as primary antibodies. As secondary antibodies, Alexa-488-conjugated goat anti-mouse IgG (1:1000), Alexa-568-conjugated goat anti-mouse IgG (1:1000), Alexa-568-conjugated goat anti-mouse IgM (1:1000), Alexa-488-conjugated goat anti-rat IgG (1:1000), Alexa-488-conjugated goat anti-rabbit IgG (1:1000), Alexa-568-conjugated goat anti-rabbit IgG (1:1000) (all purchased from Molecular Probes, Eugene, OR, USA), and Histofine Simple Stain MAX-PO(R) (Nichirei Co., Tokyo, Japan) were used.
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7

Immunostaining of Neural Stem Cells

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YAC128 NSCs were transferred to 12 mm round cover slips coated with PLO/Laminin in a four‐well plate (BD Biosciences). The cells were then washed with chilled PBS and fixed with 4% paraformaldehyde for 20 minutes at room temperature. Next, the cells were permeabilized and blocked with 0.1% Triton X‐100 (Sigma‐Aldrich) and 5% normal horse serum (Vector Laboratories) diluted in PBS for 30 minutes at room temperature. The cells were then incubated with primary antibody overnight at 4°C, followed by incubation with secondary antibody. The following secondary antibodies were used: Alexa‐555‐conjugated goat anti‐mouse IgG; Alexa‐555‐conjugated goat anti‐rabbit IgG; Alexa‐488‐conjugated goat anti‐rat IgG; and Alexa‐488‐conjugated goat anti‐rabbit IgG (1:200, Molecular Probes). Images were obtained using two confocal laser‐scanning microscope systems: a Zeiss LSM 880 scanning confocal microscope (Zeiss) and a Leica TCS Sp5 II confocal microscope (Leica). The following primary antibodies were used: anti‐NESTIN (1:40, Developmental Studies Hybridoma Bank), anti‐SOX2 (1:200, Millipore) for the detection of uncommitted neural stem cells, anti‐MAP2 (1:500, Millipore), anti‐Tuj1 (1:500, Millipore) for the detection of differentiated neurons, anti‐HTT (1:100, Sigma‐Aldrich) and anti‐ubiquitin (1:50, Santa Cruz Biotechnology).
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8

Immunofluorescent Staining of AQP3 and GFP in Cells

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Cells were fixed with 4% paraformaldehyde in 0.1 M PBS for 10 min and then permeabilized with 0.1% Triton X-100 for an additional 10 min. After incubation in blocking solution (1% goat serum/PBS) for 1 h, mouse rabbit anti-AQP3 (1:200; Cat# sc-20811, Santa Cruz Biotechnology) and rat anti-GFP (1:1,000; Cat# 04404-84, Nacalai Tesque, Kyoto, Japan) antibodies diluted in blocking solution were applied and incubated overnight at 4°C. After washing in PBS, cells were incubated with secondary antibodies (1:2000; Alexa568-conjugated goat anti-rabbit IgG (Cat# A-11011) and Alexa488-conjugated goat anti-rat IgG (Cat# A-11006); Molecular Probes) and Hoechst 33342 (0.1 μg/ml; Sigma) for 3 h at room temperature. Immunofluorescent signals were observed under a Nikon A1R Confocal Microscope (Tokyo, Japan).
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