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12 protocols using bms 754807

1

Cell Viability Assay for Cancer Cells

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MCF-7 and ZR75.1 cells were reverse transfected with control or CDH1 siRNA as described above into 96-well plates (9,000 cells/well) in 100ul of media/well. Cells were treated with 3× vehicle (DMSO), OSI-906 (Selleckchem #S1091) or BMS-754807 diluted in 50ul of media for a final volume in each well of 150ul (n=6 per concentration). Plates (2D and ultra-low attachment [ULA; Corning #3474]) were collected on day 6 and viability was measured using CellTiter Glo Viability assay (Promega #G7572). EC50 values for viability were calculated by non-linear regression and statistical differences evaluated using sum-of-squares Global f-test (p<0.05). For synergy experiments, SUM44PE and MDA-MB-134 cells were plated in 96-well ULA plates (18,000 cells/well) in 100ul of media/well. Cells were treated with 6x vehicle (DMSO), OSI-906, BMS-754807, or BEZ235 (Selleckchem #S1009) diluted in 25ul of media such that the combination of two drugs resulted in 150ul of total volume in each well (n=2 per experiment). Synergy was calculated using the Median-Effect Principle and Combination Index-Isobologram Theorem (Chou-Talalay)27 (link). Combination index values for ED50, ED75, ED90 are shown as a mean ± SEM from n=3 independent experiments.
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2

Molecular Pathway Inhibition Analysis

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Deltarasin (S7224), BVD-523 (S7854), AZD6244 (S1008), and BMS-754807 (S1124) were obtained from Selleck (Houston, TX, USA). ALW-II-41-27 was obtained from AbMole (Houston, TX, USA). The antibodies used in this study were as follows: antibodies against phospho-c-RAF (Ser338) (9427s), c-RAF (53745s), phospho-p44/42 MAPK (ERK1/2) (Thr202/Tyr204) (4370L), p44/42 MAPK (ERK1/2) (4695s), phospho-AKT (Ser473) (4060s), AKT (4691s), phospho-p70 S6 kinase (Thr389) (9234s), p70 S6 kinase (2708s), phospho-EPHA2 (Tyr594) (3970s), phospho-EphA2 (Tyr588) (12677s), EPHA2 (6997s), IGF-I receptor β (3027s), phospho-IGF-I receptor β (Tyr1135) (3918s), phospho-WNK-1 (Thr60) (4946s), and phospho-GSK-3β (Ser9) (5558s) were all from Cell Signaling Technology (Cambridge, MA, USA). An antibody against KRAS (101667-T32) was purchased from Sino Biological, and an antibody against PDE6D (ab96825) was purchased from Abcam (Shanghai, China). GAPDH (60004-1-lg) was obtained from Proteintech (Rosemont, IL, USA).
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3

Flow Cytometry-Based Viability and Apoptosis

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For flow cytometry experiments, cells were plated and grown to 80% confluence in complete media. Cultures were then exposed to the IGF1R inhibitor NVP-AEW541 (8 μM, Selleckchem), IGF1R/IR inhibitor BMS-754807 (20 μM, Selleckchem), or AR inhibitor enzalutamide (20 μM, Selleckchem), in media containing phenol red-free RMPI 1640 media supplemented with 2% charcoal-dextran-stripped FBS (Gemini BioProducts, CA, USA) for 24 or 48 h. As per the manufacturer’s recommended protocol, cells were then removed and stained with 7-AAD and Annexin-V (Affymetrix, Inc., San Diego, CA, USA) for viability and apoptosis assays, respectively. Cells were examined using an LSR II Benchtop Analyzer (BD Biosciences, San Jose, CA, USA) with FlowJo Collector’s Edition software (FloJo, LLC, Ashland, OR, USA).
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4

Small Molecule Compound Preparation

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BMS-754807 was purchased form Selleck Chemicals (Houston, TX), dissolved in DMSO (Sigma-Aldrich, Oakville, ON), and stored at −20°C. Metformin (1,1-Dimethylbiguanide-hydrochloride) was obtained from Sigma-Aldrich, dissolved in water, and stored at −20°C.
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5

Combination Therapy for Tumor Reduction

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Paclitaxel (obtained from Columbia University Medical Center-Presbyterian Hospital) was diluted with PBS to 6 mg/mL. ABT-199 and BMS-754807 were purchased from Selleckchem. Paclitaxel (6 mg/kg) was administered intraperitoneally twice per week for 3 wk, and the combination 50 mg/kg ABT-199 + 50 mg/kg BMS-754807 was administered by gavage three times per week for 3 wk. Animals were monitored for 3 wk, and tumor volume was measured twice per week using the ellipsoid volume formula 1/2 × L × W × H.
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6

Cell Viability Assay with Targeted Inhibitors

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Cells were plated in 50μL of media at 9,000 cells/well in 2D and ULA (Corning #3474) 96-well plates. Treatments were added 24 hours post seeding in an additional 50μL of respective media. IGF1R inhibitors BMS-754807 (Selleckchem #S1124) and OSI-906 (Selleckchem #S1091), PI3K inhibitor Alpelisib (Selleckchem #S2814), Akt inhibitor MK-2206 (Selleckchem #S1078), MEK inhibitor U0126 (Selleckchem #S1102) and Fulvestrant (Selleckchem #S1191) were dissolved in DMSO with a final ≤0.5% DMSO concentration in treatments. Plates were collected at day 6 and measured by CellTiter-Glo (Promega #PR-G7573) following the manufacturer’s protocol. Cell viability values were analyzed following blank cell deductions and normalization to vehicle readings. IC50 values for viability were calculated by nonlinear regression and statistical differences evaluated using sum-of-squares Global f-test (p<0.05). Synergy was assessed using SynergyFinder (35 (link)).
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7

Human Cell Culture and Receptor Inhibitor Analysis

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Human dermal microvascular endothelial cells (HMEC-1) and human embryonic kidney cells 293 (HEK293) were obtained from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). HMEC-1 were cultured in MCDB131 medium (Gibco, Thermo Fisher Scientific Inc., Waltham, MA) supplemented with 10% fetal bovine serum (FBS, Gibco), 2 mM l-glutamine (Gibco), 10 ng/mL epidermal growth factor (EGF, Sigma-Aldrich, St. Louis, MO) and 1 μg/mL hydrocortisone (Sigma-Aldrich). HEK293 cells were cultured in Dulbecco’s modified Eagle medium (DMEM; Gibco) supplemented with 10% FBS (Gibco), 100 U/mL penicillin and 100 μg/mL streptomycin sulfate (Gibco). Both cell types were cultured in a humidified atmosphere (5% CO2, 37 °C), with medium changes twice a week. BMS-754807 (referred to as RI in this article), a selective small molecule receptor inhibitor of IGF-1R and InsR (Carboni et al., 2009 (link); Wittman et al., 2009 (link); Kolb et al., 2011 (link)), was obtained from Selleck (Houston, TX) and used at a concentration of 1 μM for in vitro assays.
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8

Generation and Validation of NF2-null MN Cell Lines

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Human cell lines included an NF2-null immortalized MN line Ben-Men-1, NF2 AC-CRISPR, and two independent human primary MN for which cell line establishment and growth conditions have been previously described (15 (link), 54 (link)). All primary cultures were collected following Massachusetts General Hospital Human Subjects protocols for tumor acquisition after informed consent. In addition, we generated an immortalized human MN line, MN1-LF from an independent NF2-null human primary MN cell line derived from a surgical resection. Immortalization methods and confirmation was carried out on a fee-for-service basis by Alstem, Inc. Briefly, 1 × 105 cells were transduced with lentivirus encoding SV40 large T antigen and a puromycin resistance gene. Cells were infected at a multiplicity of infection of 2. Following selection with 1.5 μg/ml puromycin for 3 days, cells underwent an additional three passages. PCR amplification of SV40 was performed to confirm immortalization followed by expansion and freezing of cells.
Reagents included exogenous heregulin/NRG1 (Sigma); inhibitor drugs lapatinib, erlotinib, INK128/TAK-228, and BMS-754807 (Selleck Chemicals); rapamycin (EMD Millipore); AZD2014 (obtained from AstraZeneca); and MM-121 (generously provided by Merrimack Pharmaceuticals). Drug treatment concentrations and times are described in the figure legends.
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9

Cell Viability Assay with Kinase Inhibitors

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Linstinib (OSI-906), PF-562271, and BMS-754807 were purchased from Selleckchem. Cells were seeded at 40% confluency overnight and incubated with drugs dissolved in 0.1% DMSO for 48 h. Viability was measured by the CellTiter 96 AQueous One Solution cell proliferation assay (Promega, Southampton, UK) following manufacturer’s instructions. The optical absorbance was recorded at 490 nm using a BioTek 800 TS microplate reader (Agilent, Cheadle, UK). Data were normalised against the vehicle control.
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10

Detailed Signaling Pathway Profiling

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Anti-phospho-S473-Akt, anti-phospho-T308-Akt, anti-Akt1, anti-total Akt, anti-phospho-4E-BP1, anti-4E-BP1, anti-phospho-S6K1, anti-S6K1, anti-phospho-S6, anti-S6, anti-phospho-FoxO3, anti-FoxO3, anti-phospho-GSK3 α/β, anti-GSK3 α/β, anti-phospho-IGF1R, anti-IGF1R, anti-phospho-IRS, anti-IRS, anti-phospho-ERK1/2, anti-ERK1/2, anti-TSC2, anti-mTOR, anti-Rictor, and anti-phospho-tyrosine antibodies were purchased from Cell Signaling Technology. Anti-phospho-S422-SGK and anti-Grb10 antibodies were obtained from Santa Cruz Biotechnology. Rapamycin, Torin1, Ku-0063794, BKM-120, GDC-0941, AZD8931, Erlotinib, BMS754807, OSI906, PF431396, PF573228, and SB273005 were purchased from Selleckchem. Cpd22 and PDGFR inhibitor III were purchased from Calbiochem. Anti-integrin α2, anti-integrin αV, and anti-integrin α5 antibodies for flow cytometry were obtained from BD Biosciences. BTT3033 and anti-integrin α2 antibodies for immunoblot analysis were obtained from Tocris and SantaCruz Biotechnology, respectively. Anti-actin and anti-vinculin antibodies, N-methyl-2-pyrrolidone, PEG400, and lentiviral shRNA plasmids were purchased from Sigma.
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