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9 protocols using gentamycin

1

P. falciparum 3D7 Strain Culture Protocol

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The P. falciparum 3D7 strain was obtained from Artemisinin Research Center of China, Academy of Chinese Medical Sciences. Parasites were cultured in malaria culture media (MCM) containing 10.4 g/L RPMI 1640 (Gibco, CA, USA), 0.5% albumin (MP, Santa Ana, CA, USA), 0.2 g/L gentamycin (Sangon, Shanghai, China), 25 µg/ml hypoxanthine (Sigma, St Louis, Missouri, USA), 0.3 g/L L-glutamine (Sigma, St Louis, Missouri, USA), 25 mmol/L HEPES (Avantor, Radnor, PA, USA), 2.5 g/L NaHCO3 (Sigma, St Louis, Missouri, USA) and supplement of 2% healthy human erythrocytes provided by Beijing Red Cross Blood Center. Parasites were maintained at 37 °C with 5% CO2, 5% O2, and 90% N2. Giemsa-stained thin blood smears were performed to evaluate the parasite growth status and parasitemia [24 (link)].
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2

Purification and Culture of Murine NK Cells

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For primary NK cells, single hepatic lymphocytes from 6- to 8-week-old C57BL/6 mice were labeled with PE-Cy7-conjugated anti-CD3, PE-conjugated anti-CD4, APC-conjugated anti-NK1.1 and APC-Cy7-conjugated anti-CD19 (BD PharMingen, United States). NK cells were sorted as cells that express NK1.1+CD3- using a FACS Aria I flow cytometer (BD Biosciences, United States) and the purity was higher than >95%. After purification, NK cells were cultured in a 96 round bottom wells (Costar, Corning Incorporated, Corning, NY, United States) in complete RPMI 1640 medium supplemented with 10% (v/v) fetal serum (Gibco, United States), 200 mg/ml glutamine, 50 μg/ml gentamycin, 100 units/ml penicillin, 100 μg/ml streptomycin (Sangon Biotech, Shanghai, China) and interleukin-2 (IL-2, 10 U/ml, BD PharMingen, United States).
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3

Antibiotic Resistance Profiling of L. sakei

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The predicted antibiotic resistance gene information in the genome was obtained by comparing the amino acid sequences of the strains with the comprehensive antibiotic research database (CARD, http://arpcard.mcmaster.ca, accessed on 24 May 2021) [51 (link)]. The strains were clustered using HemI software [50 (link)].
The microbroth dilution method was used to determine antibiotic resistance of L. sakei according to ISO 10932:2010 [52 ]. The following 11 antibiotics were detected: chloramphenicol, rifampicin, streptomycin, kanamycin, gentamycin, tetracycline, clindamycin, neomycin, erythromycin, ciprofloxacin, and vancomycin (all purchased from Sangon Biotech Co., Ltd., Shanghai, China). OD625 was determined using an enzyme-labeled instrument (Varioskan Lux, Thermo, Waltham, MA, USA) to determine the MIC of strain to antibiotics.
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4

Evaluating Curcumin Efficacy in Molecular Pathways

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Curcumin (purity ≥ 95.0%) was purchased from Shanghai Yuanye Biotech (Shanghai, China). Carboxymethylcellulose sodium was obtained from Sigma-Aldrich (Saint Louis, MO, USA). Neomycin, streptomycin, penicillin, vancomycin, metronidazole, bacitracin, ciprofloxacin, ceftazidime and gentamycin were purchased from Sangon Biotech (Shanghai, China). TRIzol® Reagent was from Invitrogen (Carlsbad, CA, USA). High-Capacity cDNA Reverse- Transcription Kits were purchased from Applied Biosystems (Foster City, CA, USA). SYBR Green PCR Master Mix was obtained from Promega (Fitchburg, MI, USA). Proteinase inhibitor cocktail and phosphorylase inhibitor were purchased from Roche (Basel, Switzerland). Bicinchoninic acid (BCA) Protein Assay Kits were purchased from Genstar Technologies (Beijing, China). Antibodies against Akt (9272), pAkt (9271) were purchased from Cell Signaling Technology (Danvers, MA, USA). The antibody against FGF15 (ab229630) was obtained from Abcam. The antibody against Tubulin (CW0098) was from Cwbiotech (Beijing, China).
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5

Phagocytosis Assay of Macrophages

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The phagocytosis assay was performed using the mouse macrophage cell line RAW 264.7 (ATCC catalogue number TIB-71) and peritoneal macrophages as previously described53 . Peritoneal macrophages were collected from 7-week-old female C57BL/6J mice on the 5th day after intraperitoneal injection of 1 ml 5% thioglycollate broth (BD Difco, catalogue number 211716)54 . Briefly, 5 × 105 cells were infected with bacteria at a multiplicity of infection of 50 for 1 h. The cells were then washed three times with 1× PBS and treated with 500 μl Dulbecco’s modified eagle medium (Servicebio, catalogue number G4515) containing 300 μg ml−1 gentamycin (Sangon Biotech, catalogue number A506614) or amikacin (Solarbio, catalogue number A9660) for 1 h to eliminate the extracellular bacteria. After washing three times with 1× PBS, the cells were treated with 1 ml of 1% TritonX-100 (Sangon Biotech, catalogue number A110694) for 10 min to release the intracellular bacteria. Then intracellular bacteria were counted by serial dilution agar plating method.
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6

Brucella Infection Assay in RAW264.7 Macrophages

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For infections, RAW264.7 macrophages were seeded into 24-well plates at 2 × 105 cells/well or into 6-well plates at 1 × 106 cells/well and maintained for 24 h prior to infection. Parallelly, Brucella M5 was inoculated in TSB and grown in the exponential phase. The bacterial suspension was diluted in DMEM supplemented with 1% FBS and added to each well at a multiplicity of infection (MOI) of 100. The infected cells were then centrifuged at 400× g for 5 min at room temperature and incubated for 1 h at 37 °C in a 5% CO2 atmosphere. After that, the cells were washed three times with phosphate-buffered saline (PBS; Gibco) and treated with 50 μg/mL of gentamycin (#A100304; Sangon, Shanghai, China) for 1 h to kill the uninternalized bacteria. Subsequently, the cells were washed three times with PBS and incubated with a medium containing 25 μg/mL of gentamycin for the desired time points.
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7

Cardiac Myocyte H/R Protection by EGCG and Zn2+

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H9c2 cells were maintained in DMEM supplemented with 10% FBS, 2% l-glutamine, 10% sodium bicarbonate, 10% sodium pyruvate, 5% Hepes, 1% penicillin/streptomycin and 1% gentamycin (Sangon Biotech Co., Ltd., Shanghai, China) in an incubator (37°C, 95% air + 5% CO2). The cells were cultured for 1–2 days under these normal conditions, until they reached 90% confluence prior to anoxic treatment. EGCG (0, 5, 10, 15 and 20 µM) and Zn2+ (0, 5, 10, 15 and 20 µM) were added to the myocytes 30 min prior to reoxygenation. Hypoxic stress was implemented by incubating cultured H9c2 cells in serum- and glucose-free DMEM. The culture dish was placed in an airtight incubator at 37°C under an atmosphere of 95% N2 and 5% CO2 for 3 h followed by reoxygenation for 1 h in normal (37°C, 95% air + 5% CO2) conditions with 10% FBS-DMEM. EGCG and Zn2+ at various concentrations were added 30 min prior to the reoxygenation. Myocytes not exposed to H/R served as normoxic controls. At the end of the H/R treatment, myocytes were examined for viability and apoptosis by Hoechst 33258 (Beyotime Institute of Biotechnology, Haimen, China) staining and western blot analysis.
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8

Fluorescent DNA Methylation Assay

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Dam and M.SssI MTase, Dpn I, Nb.BbvCI nicking enzyme, Klenow Fragment and S-adenosylmethionine (SAM) were gotten from New England Biolabs (Ipswich, MA, USA). Gentamycin, benzyl penicillin and all oligonucleotides (Table 1) used in this study were purchased from Sangon Biotechnology Co., Ltd. (Shanghai, China). All other reagents were of analytical reagent grade (AR), and without purification for usage. Ultrapure water with 18.2 MΩ•cm resistivity was used to prepare the solutions.
A Hitachi F-7000 fluorescence spectrometer (Hitachi Ltd., Japan) was selected for all fluorescence measurements of sample solutions. The emission spectra scope ranged from 500 to 600 nm, while the wavelength of excitation light was fixed at 480 nm under room temperature. At 520 nm, the fluorescence was measured as the emission intensity. The voltage of the photomultiplier tube was set at 700 V and the emission slit was 5 nm, the same as the excitation slit.
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9

Cell Migration on Polyacrylamide Substrates

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MDA-MB-MB-231 cells were cultured in RPMI 1640 Medium (Gibco, USA) containing 5% Fetal Bovine Serum (FBS, HyClone, USA), 0.004% (w/v) Gentamycin (Sangon Biotech, China) and 1% penicillin/ streptomycin antibiotics (Gibco, USA). The cells were incubated at 37 °C and 5% CO 2 in 60 mm dishes. For experiments, PAAm samples were placed in 35mm dishes and the cells seeded at density of 1.8 ×10 4 cells cm -2 . Cells were allowed to adhere to substrate for at least 2 hours before the inspection of every other day for a total of four days. Cell moving path with its migration speed was measured by time-lapse microscope (Zeiss Axiovert 200 M) for 3 different cells, which were scanned every 30 min up to 28.5 h. The moving path of cells was tracked with plugin Mtrackj of Fiji/ImageJ software.
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