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1

Western Blot Analysis Protocol

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For western blot analysis cells were washed with phosphate-buffered saline (PBS), harvested by using a cell lifter, and lysed in Radioimmunoprecipitation assay (RIPA) buffer with complete Mini EDTA-free protease inhibitor tablets (Roche) and phosphatase inhibitor cocktail PhosSTOP (Roche). The protein concentration was quantified using the BCA Assay (ThermoFischer Scientific) as described earlier [37 (link)]. 20 μg protein lysate were separated by SDS-gel electrophoresis using a NuPAGE™ 4–12% Bis-Tris protein gel and transferred to a nitrocellulose membrane using the iBlot Dry Blotting System (all ThermoFischer Scientific). As protein standards, 10 μl Spectra Multicolour Broad Range (ThermoFisher Scientific) and 1 μl MagicMark™ XP Western Protein Standard (ThermoFisher Scientific) were used. For detection, the membranes were incubated with WesternBright Sirius HRP substrate (Advansta). Except for the membranes displayed in S2C Fig, all signals were detected by a Microchemi chemiluminescence system (DNR Bio-Imaging Systems). S2C Fig had been digitalised by using an Odyssey CT (LI-COR). Antibodies used are listed in S2 Table. Densitometric analysis of experiments was made with the Image-Studio Lite 5.2 software (LI-COR). Uncropped western blot images are displayed in the supplementary files. Raw images files are displayed in S1 Raw images.
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2

Quantitative Western Blot Analysis Protocol

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As described earlier, subcellular fractionation, cell harvest, protein determination, and western blot were performed [30 (link)]. SDS-gel separated 20 µg protein lysate electrophorese using NuPAGE™ 4–12% Bis-Tris protein gels and transferred to a nitrocellulose membrane using the iBlot dry blotting system (all Thermo Fisher Scientifc, Waltham, MA, USA). Additionally, 5 µL Spectra Multicolour Broad Range (Thermo Fisher Scientifc, Waltham, MA, USA) protein standard and 1 µL MagicMark™ XP western protein standard (Thermo Fisher Scientifc, Waltham, MA, USA) were used. For detection, the membranes were incubated with WesternBright Sirius HRP substrate (Advansta), and signals were detected by a Microchemi chemiluminescence system (DNR Bio-Imaging Systems, Ha-Satat, Israel). The antibodies used are listed in Table 2. Densitometric analysis of experiments was performed with the Image-Studio Lite 5.2 software (LI-COR, Lincoln, NE, USA). Uncropped western blot images are displayed in the Supplementary Materials. Raw images files are displayed in S1_raw_images.
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3

Western Blot Analysis Protocol

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Cell harvest, cell lysis, protein determination, and western blot were performed as previously described [18 (link)]. 20 µg protein lysate electrophoresis were separated by SDS-gel-electrophorese using NuPAGE™ 4–12% Bis-Tris protein gels and subsequently transferred to a nitrocellulose membrane using the iBlot Dry Blotting System (all Thermo Fisher Scientific, Waltham, MA, USA). 5 µL Spectra Multicolour Broad Range (Thermo Fisher Scientific, Waltham, MA, USA) protein standard and 1 µL MagicMark™ XP Western Protein Standard (Thermo Fisher Scientific, Waltham, MA, USA) were used. For detection, the membranes were incubated with WesternBright Sirius HRP substrate (Advansta, San Jose, CA, USA), and all signals were detected by a Microchemi chemiluminescence system (DNR Bio-Imaging Systems, Jerusalem, Israel). Densitometric analysis of experiments was performed with the Image-Studio Lite 5.2 software (LI-COR, Lincoln, Dearborn, MI, USA). Used antibodies are listed in Table 2. Uncropped western blot images are displayed in the Supplementary Files, Figures S2–S10.
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Western Blot Analysis of R1881 Treated Cells

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Cells (400,000 cells per well) were seeded into 6-well culture plates for Western blot analysis. After 24 h, the medium was changed to a medium containing 5% FCSdcc (Thermo Fisher Scientific, Waltham, MA, USA). After another 24 h, cells were treated with different concentrations of R1881 (0.01–10 nM) for 72 h. Subsequently, cells were harvested, and protein concentration determination was performed as previously described [26 (link)]. NuPAGETM 4–12% Bis-Tris protein gels separated 20 µg protein lysate. As protein standard, 5 µL Spectra Multicolour Broad Range (Thermo Fisher Scientific, Waltham, MA, USA) protein standard mixed with 1 µL MagicMarkTM XP Western Protein Standard (Thermo Fisher Scientific, Waltham, MA, USA) were used. Proteins were transferred to a nitrocellulose membrane using the iBlot Dry Blotting System (all Thermo Fischer Scientific, Waltham, MA, USA). WesternBright Sirius HRP substrate (Advansta, San Jose, CA, USA) was used to detect signals and digitalised using a Microchemi chemiluminescence system (DNR Bio-Imaging Systems, Ha-Satat, Israel). The antibodies used are listed in Table 2. Experiments were analysed with the Image-Studio Lite 5.2 software (LI-COR, Lincoln, NE, USA).
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