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21 protocols using lsr fortessa facs analyzer

1

Mouse Cell Surface Marker Screening

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We screened mouse surface markers using the “Mouse cell surface marker screening panel” Lyoplate (BD Biosciences, material number 562208) according to the manufacturer’s instructions. In brief, 150×10^6 cells were used for our partially reprogrammed cells (passage 15) and Oct4-neoR mES cells. Cells were plated on 0.2% gelatin coated plates and treated with neomycin three days before screening. 175×10^6 cells were used for passage 4 Sox2-EGFP MEFs. Cells were washed with PBS-EDTA, dissociated in 10× TrypLE (Invitrogen) for 5 minutes, washed once in PBS before staining for 30 minutes in primary antibody in staining medium (PBS-EDTA supplemented with 0.5% BSA) according to manufacturer’s instructions, washing once in PBS, staining for 30 minutes in fluorophore conjugated secondary antibody in staining medium, washing once in PBS and analyzed on a BD LSR Fortessa FACS analyzer in in staining medium. We used a high concentration of TrypLE to verify that all identified markers would not be cleaved by our dissociation reagent. We further validated a subset of these identified makers with our control populations dissociated in 1× TrypLE and stained with fluorophore conjugated antibodies as described below.
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2

Mouse Cell Surface Marker Screening

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We screened mouse surface markers using the “Mouse cell surface marker screening panel” Lyoplate (BD Biosciences, material number 562208) according to the manufacturer’s instructions. In brief, 150×10^6 cells were used for our partially reprogrammed cells (passage 15) and Oct4-neoR mES cells. Cells were plated on 0.2% gelatin coated plates and treated with neomycin three days before screening. 175×10^6 cells were used for passage 4 Sox2-EGFP MEFs. Cells were washed with PBS-EDTA, dissociated in 10× TrypLE (Invitrogen) for 5 minutes, washed once in PBS before staining for 30 minutes in primary antibody in staining medium (PBS-EDTA supplemented with 0.5% BSA) according to manufacturer’s instructions, washing once in PBS, staining for 30 minutes in fluorophore conjugated secondary antibody in staining medium, washing once in PBS and analyzed on a BD LSR Fortessa FACS analyzer in in staining medium. We used a high concentration of TrypLE to verify that all identified markers would not be cleaved by our dissociation reagent. We further validated a subset of these identified makers with our control populations dissociated in 1× TrypLE and stained with fluorophore conjugated antibodies as described below.
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3

Flow Cytometry of IVF-Treated Cells

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We adjusted the number of cells to 2.5 × 105 cells/mL. We exposed the cells to the IVF for 15 minutes. We treated one of the samples with PBS and stained with PI, while the other samples were exposed to each IVF (Dextrose, NaCl, Ringer) and stained with PI. We performed the flow cytometry experiments using the BD LSRFortessa FACS analyzer (BD Biosciences, Franklin Lakes, NJ, USA). The intact cells were accomplished based on their forward scatter (cell size) versus side scatter (cell granularity) profiles using blue (488 nm) excitation laser. We analyzed the data using the FlowJo v10 software (TreeStar, Inc., OR, USA). We performed double cell discrimination by plotting the height against the area for forward scatter. While double cells have roughly the same height with single cells, they have double the area values of single cells. Thus, we identified and excluded double cells based on disproportions between height and area. Then, we distinguished live cells from debris and dead cells by gating on the area values of cells for forwards scatter versus side scatter plots. We excluded events found at the bottom left corner of the density plots in gating to separate debris and dead cells with lower level of forward scatter.
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4

Cell Cycle Analysis of Anticancer Compounds

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Extracts from Passiflora edulis fruit (PEF), Annona muricata leaves (AML), Annona muricata seeds (AMS) that displayed the best cytotoxicity as well as doxorubicin were used to treat CCRF–CEM cells (1 × 106) at their IC50 values. Thus, CCRF–CEM cells were cultured in RPMI medium as described above, in the presence of each sample at a concentration corresponding to the IC50 values obtained in the cell line. The cell cycle was then analyzed after incubation for 24, 48 and 72 h. All reagents, experimental conditions and apparatus were identical to those previously reported (Kuete et al. 2013a (link); Dzoyem et al. 2013 (link)). Briefly, cell cycle analysis was performed by flow cytometry using Vybrant® DyeCycle™ (Invitrogen, Darmstadt, Germany). Cells were measured after Vybrant® DyeCycle™ Violet staining (30 min at 37 °C) on a LSR-Fortessa FACS analyzer (Becton–Dickinson, Heidelberg, Germany) using the violet laser. Vybrant® DyeCycle™ Violet stain was measured with 440 nm excitation. Cytographs were analyzed using FlowJo software (Celeza, Switzerland). All experiments were performed at least in triplicate.
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5

Analyzing Mitochondrial Membrane Potential

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CCRF-CEM cells were treated with AAR, ACL or vinblastine. The MMP was analyzed using 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide) (JC-1; Biomol, Hamburg, Germany) staining as previously described [19 (link)]. Cells were measured in a LSR-Fortessa FACS analyzer (Becton-Dickinson). The JC-1 signal was measured at an excitation of 561 nm (150 mW) and detected using a 586/15 nm band-pass filter. The signal was analyzed at 640 nm excitation (40 mW) and detected using a 730/45 nm bandpass filter. Cytographs were analyzed using FlowJo software (Celeza, Olten, Switzerland). All experiments were performed at least in triplicate.
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6

Quantifying Mitochondrial and Oxidative Stress

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To quantify the modification of the mitochondrial membrane potential (MMP) and the reactive oxygen species (ROS) production in CCRF-CEM cells resulting from the application of BTL, either compound 8 or DMSO (negative control), or the respective positive controls for MMP or ROS evaluations, valinomycin or H2O2 (Sigma-Aldrich, Taufkirchen, Germany), the 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide (JC-1; Biomol, Hamburg, Germany) staining and the 2´,7´-dichlorodihydrofluorescein diacetate (H2DCFH-DA) (Sigma-Aldrich) staining, respectively for MMP and ROS measurements, were combined with the flow cytometry used in similar experimental conditions, as earlier reported [45 (link)]. The concentrations of samples used to treat the CCRF-CEM cells were 0.25, 0.5, 1, and 2 folds the IC50. The treated cells (1 mL; 1 × 106 cells) were incubated for 24 h under the standard cell culture condition. Cells were further stained for 30 min with 10 µL of staining solution (JC-1 for ROS evaluation or H2DCFH-DA solution for ROS evaluation) according to the manufacturer’s protocol. Using the LSRFortessa FACS analyzer (Becton–Dickinson, Heidelberg, Germany), the amount of 1 × 104 cells was further measured as described earlier [31 (link), 45 (link)–47 (link)].
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7

Mitochondrial Membrane Potential Analysis

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The effects of extracts on the MMP were analyzed by 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide) (JC-1; Biomol, Germany) staining (Kuete et al. 2013c (link)). JC-1 is a dye that can selectively enter into mitochondria and exhibits an intense red fluorescence in healthy mitochondria with normal membrane potentials. In cells with reduced MMP, the red fluorescence disappears. Briefly, 1 × 106 CCRF–CEM cells treated at different concentrations with PEF, AML, AMS or vinblastine for 24 h were incubated with JC-1 staining solution according to the manufacturer`s protocol for 30 min. Subsequently, cells were measured in a LSR-Fortessa FACS analyzer (Becton–Dickinson). For each sample, 1 × 104 cells were counted. The JC-1 signal was measured with 561 nm excitation (150 mW) and detected using a 586/15 nm bandpass filter. The samples signal was analyzed with 640 nm excitation (40 mW) and detected using a 730/45 nm bandpass filter. All parameters were plotted on a logarithmic scale. Cytographs were analyzed using FlowJo software (Celeza, Switzerland). All experiments were performed in triplicate.
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8

Evaluating Mitochondrial Membrane Potential

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The JC-1 Mitochondrial Membrane Potential Assay Kit (Cayman Chemical, Ann Arbor, MI, USA) was applied for the detection of MMP by flow cytometry according to the manufacturer’s instructions. The cationic dye, 5, 5’, 6, 6’- tetrachloro- 1, 1’, 3, 3’- tetraethylbenzimidazolylcarbocyanine iodide (JC-1) enters the mitochondria and changes its fluorescent properties based on the aggregation of the probe. In healthy cells having high MMP, JC-1 forms complexes known as J-aggregates with intense red fluorescence. On the other hand, in cells with low MMP, JC-1 remains in its monomeric form showing green fluorescence [70 (link)]. Aliquots of 5×105 cells/ml were treated with DMSO as negative control, doxorubicin as positive control or 1-, 2- or 4-fold IC50 of Aloe-emodin for 24 and 48 h. A LSR-Fortessa FACS analyzer (Becton–Dickinson) was used to detect the J-aggregate form of JC-1 with an excitation wavelength of 535 ± 20 nm and an emission wavelength of 590 ± 20 nm as well as the monomeric form of JC-1 at excitation and emission wavelengths of 485 and 535 nm, respectively. The results were analyzed by the FlowJo software (Celeza, Olten, Switzerland). 2×104 cells were counted for each experiment which were repeated in triplicate [71 (link)].
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9

Cell Cycle Analysis of Cytotoxic Extracts

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Extracts from Albizia adianthifolia roots (AAR) and Alchornea cordifolia leaves (ACL) that displayed the best cytotoxicity as well as doxorubicin were used to treat CCRF-CEM cells (1 × 106) at their IC50 values. The cell cycle was then analyzed after incubation for 24 h, 48 h and 72 h. All reagents, experimental conditions and apparatus were identical to those previously reported [12 (link), 16 (link)]. Briefly, cell cycle analysis was performed by flow cytometry using Vybrant® DyeCycle™ (Invitrogen, Darmstadt, Germany). Cells were measured after Vybrant® DyeCycle™ Violet staining (30 min at 37 °C) on a LSR-Fortessa FACS analyzer (Becton-Dickinson, Heidelberg, Germany) using the violet laser. Vybrant® DyeCycle™ Violet stain was measured with 440 nm excitation. Cytographs were analyzed using FlowJo software (Celeza, Switzerland). All experiments were performed at least in triplicate.
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10

Flavonolignan 2 Modulates Mitochondrial Membrane Potential and ROS in CCRF-CEM Cells

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The modification of the MMP as well as the ROS levels after the application of BAL, and flavonolignan 2 at ¼ IC50, ½ IC50, IC50, and 2 × IC50 to CCRF-CEM cells (1 × 106) was performed by flow cytometry [45 (link)]. DMSO was used as solvent control while valinomycin served as a positive control. The cells were incubated for 24 h and further stained for 30 min with JC-1 [45 (link)] and measured (1 × 104 cells) in an LSR-Fortessa FACS analyzer (Becton–Dickinson) [45 (link)]. For ROS determination, CCEF-CEM cells were similarly treated BAL, the flavonolignan 2, hydrogen peroxide (H2O2; positive control), DMSO (solvent control) as in the MMP analysis, then incubated for 24 h. They were further stained with H2DCFH-DA and measured (1 × 104 cells) in an LSR-Fortessa FACS analyzer [40 (link), 51 (link), 52 (link)].
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