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6 protocols using rhil 15

1

Isolation and Culture of Breast Tumor Lymphocytes

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For direct ex vivo isolation, fresh breast tumor or tissue was coarsely minced with scalpels and then dissociated using the MACS human tumor dissociation kit on a gentleMACS Dissociator as per manufacturer’s instructions (Miltenyi Biotec). Samples were washed twice with sterile RPMI-1640 and used immediately for downstream assays. Lymphocytes were also harvested using a “grid” explant system adapted from a protocol first described by Clark and colleagues (35 (link)). Briefly, fresh breast tumor or tissue was minced using scalpels and placed onto rat tail collagen (100μg/ml, BD Biosciences)-coated Cellfoam grids (Cytomatrix Pty Ltd). Each grid was placed into a separate well of a 24-well tissue culture plate and cultured in complete medium [Iscove’s Modified Dulbecco’s Medium (IMDM, Life Technologies), 10% heat-inactivated foetal bovine serum (FBS, Life Technologies), L-glutamine (292μg/ml, Life Technologies), penicillin (100units/ml, Life Technologies), streptomycin (100μg/ml, Life Technologies) and 2-mercaptoethanol (3.5μl/L, Life Technologies)] supplemented with recombinant human (rh) IL-2 (100 IU/ml, Proleukin, Novartis Pharmaceuticals UK Ltd), and rhIL-15 (10 ng/ml, BioLegend). The grids were maintained for 3 weeks in culture at 37°C/5% CO2, and the lymphocytes harvested by washing the wells/grids with 0.01 mM HEPES/HBSS.
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2

Expansion and Purification of Primary NK Cells

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Primary NK cells were isolated from at least 5 x 106 cells of cryopreserved PBMCs using the EasySep Human NK cell Enrichment Kit according to the manufacturer’s instructions (STEMCELL Technologies, Canada). The purity of NK cells was > 95% of CD3-CD56+ cells as determined by flow cytometry. Primary NK cells obtained from healthy donors (n =4) were cultured and expanded in NK MACs medium (Miltenyi Biotec, Bergisch-Gladbach, Germany) supplemented with 10% human AB serum (Sigma,), 1 mM Penicillin/Streptomycin (Sigma), 5 ng/ml of rhIL-2 and rhIL-15 (Biolegend, CA, USA) at 37°C with 5% CO2 for 7-10 days. Expanded NK cells were used in the experimental validation of the NK cell memory assay.
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3

MAIT Cell Cloning Protocol

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MAIT cell cloning was performed as described by Cansler et al. (22 ). Briefly, MR1 tetramer-positive T cells were sorted from cryopreserved bronchoalveolar lavage cells and rested overnight. Limiting dilution assay was performed to seed single cells in 96-well plates in RPMI media containing 10% human serum (HuS), 2% L-glutamine, 0.1% gentamycin and irradiated feeder cells (lymphoblastoid cell lines and peripheral blood mononuclear cells). Media was supplemented with recombinant human (rh)IL-2 (5 ng/mL), rhIL-7 (0.5 ng/mL), rhIL-12 (0.5 ng/mL), rhIL-15 (0.5 ng/mL) (BioLegend) and anti-CD3 (0.03 µg/mL) (eBiosciences). Plates were assessed weekly for growth with clones taking 2 – 3 weeks to grow. Clones were taken forward for subsequent analyses only from plates, which had growth in approximately less than 30% of the wells. Resulting clones were subjected to surface MR1 5-OP-RU tetramer and monoclonal antibody staining with 1:200 of Live/dead viability dye (Aqua, Life Technologies), 1:25 of anti-CD3 PerCP/Cy5.5 (UCHT1, BioLegend), 1:25 of anti-CD4 BV785 (OKT4, BioLegend), 1:50 of anti-CD8 (FITC, RPA-T8) and 1:25 of anti-CD26 PE-Cy7 (BA5b, BioLegend), as well as IFN-γ ELISPOT assay to confirm MAIT cell identify and clonal purity.
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4

CD16 Ligation Assay for NK Cell Activation

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For the CD16 ligation assay, 0.5 × 106 to 1 × 106 PBMCs were stimulated in 96-well round-bottom plates in a 37°C incubator with 5% CO2. PBMCs were thawed and cultured for 12 to 14 hours with basal medium [RPMI 1640 containing 10% Human AB serum (Sigma-Aldrich), 10 mM Hepes (Corning), 1× nonessential amino acids (Corning), 1 mM sodium pyruvate (Corning), 1× penicillin (100 IU/ml)–streptomycin (100 μg/ml) solution (Gibco), 2 mM L-glutamine (Gibco)] and recombinant human IL-15 (rhIL-15) (1 ng/ml) (Miltenyi). Before stimulation, medium was changed to fresh medium containing indicated concentrations of anti-CD16 (BD Biosciences) antibody–conjugated MACS iBeads (Miltenyi). After 3 hours, cells were harvested for flow cytometric analysis as described above. For cytokine priming assays, replicates of 106 PBMCs harvested from a healthy donor Leukopak (STEMCELL) were incubated overnight in basal medium containing rhIL-15 (1 ng/ml), rhIL-12 (10 ng/ml) (BioLegend), and rhIL-18 (100 ng/ml) (Gibco). For purified NK cell stimulation, NK cells were isolated from Leukopak PBMCs using the Human NK Cell Negative Selection Kit (STEMCELL) in a 96-well round-bottom plate using an EasyPlate magnet (STEMCELL) per the manufacturer’s instructions.
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5

NK cell Stimulation Assay

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Unprimed or primed NK-92 MI cells resuspended in 500μl of cMEM-α media were seeded at 5×105 live cells/well into 24-well tissue culture plates. The cells were stimulated with 5 ng/ml of rhIL-12, rhIL-15 and rhIL-18 (Biolegend) alone or in combination for 18 h. Phorbol myristic acetate (PMA) (20 ng/ml; Sigma) plus ionomycin (1 μg/ml; Sigma) were used as positive control. Cell-free culture supernatant was collected by centrifugation at 1,000× g for 5 min and measured for IFN-γ production by Human IFN-γ ELISA Set (BD Biosciences) according to the manufacturer’s instructions. For in vitro re-stimulation, primary NK cells obtained from a clinical cohort were resuspended in R10 and then plated at 1.25×105 live cells/well into 96-well round-bottom culture plate. The cells were incubated in the absence or presence of iBP (MOI 100) for 18 h. Unstimulated or stimulated NK cells were subsequently stimulated with 5 ng/ml of rhIL-12 and rhIL-18 (Biolegend CA, USA) for 18 h. NK cells were analysed for IFN-γ production using flow cytometry.
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6

Cloning and Characterizing MAIT Cells

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MAIT cell cloning was performed as described by Cansler et al. [20] . Briefly, MR1 tetramer-positive T cells were sorted from cryopreserved bronchoalveolar lavage cells and rested overnight. Limiting dilution assay was performed to seed single cells in 96-well plates in RPMI media containing 10% human serum (HuS), 2% L-glutamine, 0.1% gentamycin and irradiated feeder cells (lymphoblastoid cell lines and peripheral blood mononuclear cells). Media was supplemented with recombinant human (rh)IL-2 (5 ng/mL), rhIL-7 (0.5 ng/mL), rhIL-12 (0.5 ng/mL), rhIL-15 (0.5 ng/mL) (BioLegend) and anti-CD3 (0.03 µg/mL) (eBiosciences). Plates were assessed weekly for growth with clones taking 2 -3 weeks to grow. Clones were taken forward for subsequent analyses only from plates which had growth in approximately less than 30% of the wells. Resulting clones were subjected to surface MR1 5-OP-RU tetramer and monoclonal antibody staining with 1:200 of Live/dead viability dye (Aqua, Life Technologies), 1:25 of anti-CD3 PerCP/Cy5.5 (UCHT1, BioLegend), 1:25 of anti-CD4 BV785 (OKT4, BioLegend), 1:50 of anti-CD8 (FITC, RPA-T8) and 1:25 of anti-CD26 PE-Cy7 (BA5b, BioLegend), as well as IFN-γ ELISPOT assay to confirm MAIT cell identify and clonal purity.
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