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9 protocols using collagenase type b

1

Isolation of Intestinal Lymphocytes

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Single-cell suspensions were prepared from intestines as described previously (Zhang et al., 2015 (link)). In brief, intestines were flushed with PBS to remove fecal matter and mucus. Fragments (<0.5 cm) of intestines were digested in 10 ml DMEM containing 2 mg/ml collagenase type B (Roche), 10 µg/ml deoxyribonuclease I (Roche), and 4% bovine serum albumin (Sigma-Aldrich) at 37°C with shaking for 90 min. The digested mixture was then diluted with 30 ml of plain DMEM, filtered through a 70-µm strainer, and centrifuged at 850 g for 10 min. The cell pellets were suspended in 5 ml of 80% Percoll (GE Healthcare), overlaid with 8 ml 40% Percoll, and spun at 2,000 rpm for 20 min at 4°C without braking. Enriched lymphocytes were collected from the interface. For sorting of intestinal stem cells, we did not perform Percoll separation.
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2

Isolation of Intestinal CD4+ T Cells

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We prepared single-cell suspensions of mononuclear cells from small intestines as previously described (14 ). Briefly, small intestines were flushed with cold PBS to remove mucus and feces. The intestines were cut into <0.5 cm fragments and digested in 10 mL of DMEM containing 4% bovine serum albumin (Sigma-Aldrich, St. Louis, MO), 2 mg/mL collagenase type B (Roche, Indianapolis, IN), and 10 μg/mL DNase I (Roche) at 37°C with shaking (250rpm) for 90 minutes. The digested mixture was diluted with 30 mL DMEM, filtered through a 100 μm strainer, and centrifuged for 10 minutes at 850g. The cells were resuspended in 5 mL of 80% Percoll (GE Healthcare, Little Chalfont, United Kingdom) and overlaid with 8 mL of 40% Percoll. The cells were spun at 4°C for 20 minutes at 800g without braking. The interface, which contains the live mononuclear cells was collected and washed twice with PBS. Live CD4+ T cells (Fixed Viability DyeCD90.2+CD4+; all from eBioscience, Waltham, MA) were stained with fluorescent antibodies and sorted on the BD FACSAria (BD Pharmingen, San Diego, CA).
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3

Antibody Characterization for Protein Analysis

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Isoproterenol (ISP) hydrochloride, bovine serum albumin (BSA), taurine, 2,3-butanedione monoxime, 2,2,2-tribromoethanol, and 2-methyl-2-butanol were purchased from Sigma (St. Louis, MO, USA). Collagenase type B was from Hoffmann-La Roche (Basel, Switzerland). Hyaluronidase was from Worthington Biochemical (Lakewood, NJ, USA).
Antibodies used were as follows: anti-PCAF (#3378S), anti-SMAD2 (#5339S), anti-SMAD2/3 (#8685S), and phospho-SMAD2/3 (#8828S) were from Cell Signaling Technology (CST, Danvers, MA, USA); anti-actin (#A2066) that recognized the pan-actin was from Thermo Fisher Scientific (Thermo Fisher Scientific, Waltham, MA, USA); anti-alpha-smooth muscle actin (α-SMA) (#ab5694), collagen type I alpha 1 (COL1A1) (#ab34710), and acetyl-lysin (#ab21623) were from Abcam (Cambridge, UK); β-actin (#sc-47778), normal mouse IgG (#sc-2025), and normal rabbit IgG (#sc-2027) were from Santa Cruz (Santa Cruz Biotechnology, Dallas, TX, USA); horseradish peroxidase (HRP)-conjugated secondary antibody against mouse IgG or rabbit IgG was from Cell Signaling Technology (Danvers, MA, USA); Alexa Fluor 488-conjugated anti-mouse IgG (#A110001) or rabbit IgG (#A110008) was from Thermo Fisher Scientific (Thermo Fisher Scientific, Waltham, MA, USA).
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4

Isolation and Culture of Adult Mouse Ventricular Myocytes

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Adult mouse ventricular myocytes (AMVMs) were isolated and cultured as previously described [22 (link)]. Briefly, after the hearts of deeply anesthetized WT, Trpc1−/−, and Trpc6−/− adult mice were quickly excised, cannulated via the aorta, and then perfused at 37 °C as follows. The hearts were first perfused for 3 min with a Ca2+-free bicarbonate-based buffer containing 120 mM NaCl, 5.4 mM KCl, 1.2 mM MgSO4, 1.2 mM NaH2PO4, 5.6 mM glucose, 20 mM NaHCO3, 10 mM 2,3-butanedione monoxime, and 5 mM taurine (Sigma-Aldrich) followed by a buffer containing 0.4 mg/mL collagenase type B (Roche, Basel, Switzerland), 0.3 mg/mL collagenase type D (Roche), and 0.03 mg/mL protease type XIV (Sigma-Aldrich).
Afterward, the ventricles were separated from the atria and then minced as described above in Section 2.4. AMVMs were isolated by mechanically pulling them apart and then filtered using a sterile 250-μm filter top. The remaining pellet was resuspended in Tyrode's solution by a stepwise increase of the Ca2+ concentration to 1.2 mM. Then, the cells were plated on cell-culture dishes pre-coated with laminin. After 4 h, round and unattached cells were removed. The basal culture medium was modified M-199 containing 2 mM carnitine, 5 mM creatine, and 5 mM taurine.
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5

Isolation of Mouse Ventricular Myocytes

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Ventricular myocyte was isolated from the mouse hearts using a previously described method [43 (link)]. Mice were injected with heparin (50 units) and sacrificed by cervical dislocation. The heart was quickly removed from the chest, and the aorta was retrogradely perfused at 37 °C for 3 min with calcium-free Tyrode buffer (137 mM NaCl, 5.4 mM KCl, 1 mM MgCl2, 10 mM glucose, 10 mM HEPES, 10 mM 2,3-butanedione monoxime (Sigma), and 5 mM taurine (Sigma) at pH 7.4) gassed with 95% O2 and 5% CO2. Enzymatic digestion was initiated by adding collagenase type B (0.35 U/ml; Roche, Basel, Switzerland) and hyaluronidase (0.1 mg/ml; Sigma) to the perfusion solution. When the heart became swollen after 10 min of digestion, the left ventricle was quickly removed, cut into several chunks, and further digested in the same enzyme solution on a shaker (60–70 rpm) for 10 min at 37 °C. The supernatant containing the dispersed myocyte was filtered through a cell strainer (100 µm diameter; BD Falcon, New York, USA) and gently centrifuged at 500 rpm for 1 min. Extracellular calcium was incrementally added back to a final concentration of 1.25 mM over 30 min to avoid the calcium paradox.
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6

Isolation of EDL myofibers

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EDL myofibers were isolated as previously described65 (link). Briefly, the extensor digitorum longus (EDL) muscle was dissected and digested in 0.2% Collagenase type B (catalog # 11088831001, Roche) in DMEM at 37 °C for 1 h. Single myofibers were isolated by triturating the digested EDL muscle with polished Pasteur pipettes and then fixed with PFA 4%.
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7

Isolation of intestinal immune cells

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Single cell suspensions were prepared from intestines as described, with modifications (57 ). Briefly, intestines were flushed with PBS to remove fecal matter and mucus. Fragments (<0.5 cm) of intestines were digested in 10 mL of DMEM containing 2 mg/mL collagenase type B (Roche), 10 μg/mL DNase I (Roche), and 4% BSA (Sigma) at 37 °C with shaking for 90 min. The digested mixture was then diluted with 30 mL of plain DMEM, filtered through 70-μm strainers, and centrifuged at 850 × g for 10 min. Cells pellets were suspended in 5 mL 80% Percoll (GE Healthcare), overlayed with 8 mL 40% Percoll, and spun at 2000 rpm for 20 min at 4°C without braking. Enriched lymphocytes were collected from the interface. Stromal, endothelial, epithelial, and CD45+TCR-β cells were sorted directly from single cell suspensions without Percoll separation.
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8

Isolation of Mouse Ventricular Myocytes

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Ventricular myocytes were isolated from mouse hearts using the method as described previously [11 (link)]. Male mice of 8–12 weeks of age (25–32 g) were used for the study. In brief, afterheparin (50 units) injection, animals were sacrificed by cervical dislocation. The heart was quickly removed from the chest and the aorta was retrogradely perfused at 37°C for 3 min with calcium-free Tyrode buffer (137 mM NaCl, 5.4 mM KCl, 1 mM MgCl2, 10 mM glucose, 10 mM HEPES, 10 mM 2, 3-butanedione monoxime (BDM; Sigma), and 5 mM taurine (Sigma) (pH 7.4)) gassed with 95% O2/5% CO2. The enzymatic digestion was initiated by adding collagenase type B (0.35 U/ml; Roche) and hyaluronidase (0.1 mg/ml; Sigma) to the perfusion solution. When the heart became swollen after 10 min of digestion, the left ventricle was quickly removed, cut into several chunks, and further digested in a shaker (60–70 rpm) for 10 min at 37°C in the same enzyme solution. The supernatant containing the dispersed myocytes was filtered through a cell strainer (100 μm, BD Falcon) and gently centrifuged at 500 rpm for 1 min. Extracellular Ca2+ was incrementally added back to 1.25 mM over a span of 30 min to avoid Ca2+ paradox. This procedure usually yielded more than 50% viable rod-shaped ventricular myocytes with clear sarcomere striations. Myocytes with obvious sarcolemmal blebs or spontaneous contraction were not used.
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9

Isolation of Murine Cardiomyocytes for Protein Analysis

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Con or CKO male mice (8–12 weeks of age) were anesthetized with 2,2,2‐tribromoethanol (TBE). The heart was quickly removed from the chest and retrograde perfused at a constant flow rate of 3 ml/min at 37°C for 2–3 min with a Ca2+‐free bicarbonate‐based buffer containing 120 mM NaCl, 5.4 mM KCl, 1.2 mM MgSO4, 1.2 NaH2PO4, 5.6 mM glucose, 20 mM NaHCO3, 10 mM 2,3‐butanedione monoxime (BDM; Sigma) and 5 mM taurine (Sigma), gassed with 95% O2‐5%CO2 to washout remaining Ca2+ in the heart. Following perfusion with the Ca2+‐free buffer, enzymatic digestion was initiated by perfusing with a collagenase buffer containing 0.4 mg/ml collagenase type B (Roche, Basel, Switzerland), 0.3 mg/ml collagenase type D (Roche), and 0.03 mg/ml protease type XIV (MilliporeSigma) in 50 ml of Ca2+‐free perfusion buffer. All solutions were filtered with a 0.2 µM filter. Hearts were perfused with the collagenase buffer for 15–20 min until the heart was fully digested. Collagenase buffer was then washed out by perfusing again with Ca2+‐free buffer for 2–3 min. Cardiomyocytes (CMs) were isolated by mechanically teasing the cells apart. They were then gently triturated with a plastic transfer pipette and filtered using a sterile 100 µM filter (Song et al., 2010). Myocytes were then allowed to settle by gravity. CMs were then snap‐frozen in liquid nitrogen for later use in Western blot analysis.
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