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5 protocols using vemurafenib

1

Culturing and Characterizing Melanoma Cell Lines

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All cancer cell lines were purchased from American Type Culture Collection (ATCC; Manassas, VA) between February 2013 and July 2014. As indicated in the provided information, all cell lines were authenticated by their karyotypes, images and detailed gene expression. The cells were preserved and passaged in accordance with ATCC protocols for a maximum of 2 months and tested weekly for mycoplasma infection by PCR method. Cells were cultured in DMEM (Gibco-BRL, NY) supplemented with 10% FBS (Corning, NY) and 1% penicillin/streptomycin at 37 °C in a humidified 5% CO2 incubator. Dr. Joon Kim (Korea Advanced Institute of Science and Technology, Daejeon, Korea) provided the parental WM3248 melanoma cells and vemurafenib-resistant WM3248 melanoma cells6 (link). The parental WM3248 cells and vemurafenib-resistant WM3248 cells were grown in MEM (Gibco-BRL) supplemented with 10% FBS; vemurafenib-resistant WM3248 cells were maintained in the presence of 2 μM vemurafenib (Adooq Bioscience, CA). Before the experiments, cell number and viability were measured using a Luna II automated cell counter (Logos Biosystems, Anyang, Korea).
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2

BRAF and MEK Inhibitor Dilution

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Vemurafenib was acquired from Adooq Bioscience (Irvine, CA, USA), dabrafenib from AbMole BioScience (Housten, TX, USA), trametinib from Selleckchem (Housten, TX, USA), and cobimetinib from Roche (Basel, Switzerland). BRAF and MEK inhibitors were diluted according to the manufacturers’ instructions with DMSO (Life Technologies, Darmstadt, Germany). Final concentrations of the inhibitors are shown in Table 1.
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3

Investigating Combination Therapy Effects

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I3C was purchased from Sigma–Aldrich (St. Louis, MO), Vemurafenib (Adooq Bioscience, Irvine, CA), and UO126 (Cell Signaling, Danvers, MA). To study the effect of I3C, cells were treated with or without 200 μM I3C every 24 h for 72 h and harvested at 24, 48, and 72 h for western blot and flow cytometric analysis. Cells were treated with Vemurafenib and UO126 for 48 h before harvesting them for western blots. For the experiments on the combination of I3C and Vemurafenib treatment, cells were treated with the compounds for 24 h. I3C, Vemurafenib, and UO126 were dissolved in 99.9% HPLC grade DMSO (Sigma–Aldrich, Milwaukee, WI) and the final dilution was performed in the media aliquots used for treatment.
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4

Dock180 and Elmo1 Knockdown with Vemurafenib

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We followed the methods of Lee et al.19 (link) Briefly, cells were seeded into 96-well microtiter plates, followed by transfection with 20 nM siRNA targeting Dock180 and Elmo1 (si-Dock180 and si-Elmo1) or Stealth™ siRNA control (si-Ctrl) plus vemurafenib (A10739; Adooq Bioscience) as for 24, 48, or 72 hours.
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5

Cell-based Assay of Multi-Targeted Kinase Inhibitors

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Regorafenib, M-2, M-5, and elacridar were purchased from Toronto Research Chemicals (North York, ON). Ko143 was from Sigma-Aldrich (St. Louis, MO). Imatinib mesylate was from Focus Biomolecules (Plymouth Meeting, PA). Afatinib, bortezomib, cabozantinib, carfilzomib, dabrafenib, dacomitinib, dasatinib, lapatinib, lenvatinib, pazopanib, ponatinib, ruxolitinib, tofacitinib, trametinib, vandetanib, and vemurafenib were from AdooQ Bioscience (Irvine, CA). Sorafenib was from LKT Laboratories Inc. (St. Paul, MN). Sunitinib was from Synkinase Pty Ltd. (San Diego, CA). Crizotinib was from LC Laboratories Inc. (Woburn, MA). Gefitinib and erlotinib were from Cayman Chemical Company (Ann Arbor, MI). Nilotinib was from ChemScene, LLC (Monmouth Junction, NJ). All other chemicals and reagents were of analytical grade and were obtained from commercial sources.
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