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H3k9me2 antibody

Manufactured by Abcam
Sourced in United Kingdom

The H3K9me2 antibody is a lab equipment product that detects the dimethylation of lysine 9 on histone H3. This post-translational modification is associated with transcriptional repression and heterochromatin formation.

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2 protocols using h3k9me2 antibody

1

ChIP Assay for KLF2 Binding and Histone Modifications

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ChIP was conducted using a ChIP assay kit (Cell Signaling Technology, USA) as described previously (Cui et al., 2018 (link)). For the KLF2 ChIP assay, DF1 cells were transfected with pCMV-Myc-KLF2 or an empty pCMV-Myc vector. The transfected cells were fixed in 1% formaldehyde for 10 min and quenched in 0.125 M glycine for 5 min. Then, 100–900 bp DNA/protein fragments were obtained through micrococcal nuclease digestion. The samples were immunoprecipitated with Myc-specific antibody (Cell Signaling Technology, USA) and mouse IgG (Beyotime, China) as a control to analyse the binding of KLF2 to the P1 promoter. The purified DNA was amplified by qPCR with the ChIP-qPCR primer shown in Table 1. The input chromatin (2% nonimmunoprecipitated DNA) was used. The ChIP-qPCR data were calculated as previously detailed (Tatler et al., 2016 (link); Cui et al., 2018 (link)).
For the histone ChIP assay, ICP1 cells were transfected with pCMV-Myc-KLF2 or an empty pCMV-Myc vector. After 48 h of transfection, the cells were fixed and quenched as described above. The samples were immunoprecipitated with the H3K9me2 antibody (Abcam, UK) and the H3K27ac antibody (ABclonal, China), and mouse IgG (Beyotime, China) and rabbit IgG (Cell Signaling Technology, USA) were used as controls for the H3K9me2 and H3K27ac antibodies, respectively. The rest of the ChIP procedure was the same as described above.
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2

ChIP-qPCR for H3K9me2 Quantification

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ChIP analyses with H3K9me2 antibody (Abcam 1220) were performed as described previously (28 (link)). Quantification with qPCR was performed with Maxima SYBR Green/ROX qPCR Master Mix (Thermo). DNA serial dilutions were used as templates to generate a standard curve of amplification for each pair of primers, and the relative concentrations of target sequence and a control act1 sequence in ChIP and whole cell extract (WCE) samples were calculated accordingly. The final enrichment was calculated as [(ChIP target)/(WCE target)]/[(ChIP act1)/(WCE act1)]. Oligos used are listed in Supplementary Table S2.
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